Plant FIBer expression Database

Lus10019950 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G06676 139 / 4e-41 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G222300
[exp]
162 / 4e-49 AT4G06676 427 / 6e-151 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07264 EI24 Etoposide-induced protein 2.4 (EI24)
Representative CDS sequence
>Lus10019950 pacid=23156162 polypeptide=Lus10019950 locus=Lus10019950.g ID=Lus10019950.BGIv1.0 annot-version=v1.0
ATGGGTGAAAGTAGGCCTAATGTATTGAAACCTTCTGACTCTGATGAGGTAACAGTGTCAGAAAATAATGCTCCGATGGAGAAGCTTCCTGGTCTTGAAG
GGGTTATTGTGGGAATAGGAGAGCAGGTGTATTCTGCACTGCTGTTGACGTTCTTCTTTCTGCAGGTTTCGGTTGTAGGACTCATTCCATTTGTGGGGAA
GACATTTAGTTTTGTGCTTCTTTCCTGGATGTATGCCTACTACTGTTTTGAGTACAAATGGAATTTGTCTGAAGTACCACTGGACAGGAGACTGGACTTC
TTTGAAACCAACTGGGCATTTTTTGCTGGTTTTGACTTCGAATATTGTCCTTTCTCCCCTTGGAATCTCGAGGAGAAGAAGCCAACAAGAAAGCAAGTTG
AAAACAAGTTTGCTCCTTTGCTGAATATAATCTCTAACAAGCAAGTGAACAAGAAAGCAAAACTGAAAGTGGAGACAGTCATCAGGTTTGTGGAGGACGG
CTGGAAAAGCTGGAACCAGAATACCGAATTGGTTCTTCTGATGAAGGGTCACTGCTGA
AA sequence
>Lus10019950 pacid=23156162 polypeptide=Lus10019950 locus=Lus10019950.g ID=Lus10019950.BGIv1.0 annot-version=v1.0
MGESRPNVLKPSDSDEVTVSENNAPMEKLPGLEGVIVGIGEQVYSALLLTFFFLQVSVVGLIPFVGKTFSFVLLSWMYAYYCFEYKWNLSEVPLDRRLDF
FETNWAFFAGFDFEYCPFSPWNLEEKKPTRKQVENKFAPLLNIISNKQVNKKAKLKVETVIRFVEDGWKSWNQNTELVLLMKGHC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G06676 unknown protein Lus10019950
[exp]
0 1
AT5G39510 ZIG1, SGR4, ATV... SHOOT GRAVITROPSIM 4, VESICLE ... Lus10021624
[exp]
3.3 0.9288
AT4G04740 CPK23, ATCPK23 calcium-dependent protein kina... Lus10022624
[exp]
4.2 0.9253
AT4G31410 Protein of unknown function (D... Lus10026950
[exp]
4.2 0.9117
AT1G04555 unknown protein Lus10014458
[exp]
6.3 0.9265
AT1G03950 VPS2.3 vacuolar protein sorting-assoc... Lus10033914
[exp]
9.2 0.9180
AT2G40110 Yippee family putative zinc-bi... Lus10040190
[exp]
9.4 0.9172
AT5G20090 Uncharacterised protein family... Lus10038250
[exp]
10.4 0.9240
AT3G28050 nodulin MtN21 /EamA-like trans... Lus10039425
[exp]
14.1 0.9004
AT2G01350 QPT quinolinate phoshoribosyltrans... Lus10018781
[exp]
14.5 0.9065
AT3G58170 ATBET11, ATBS14... ARABIDOPSIS THALIANA BET1P/SFT... Lus10033868
[exp]
18.0 0.9072

Lus10019950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.