Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71900 427 / 2e-150 Protein of unknown function (DUF803) (.1) AT1G34470 407 / 3e-142 Protein of unknown function (DUF803) (.1) AT4G09640 390 / 2e-135 Protein of unknown function (DUF803) (.1) AT4G13800 328 / 1e-111 Protein of unknown function (DUF803) (.1) AT3G23870 323 / 6e-110 Protein of unknown function (DUF803) (.1) AT2G21120 301 / 3e-101 Protein of unknown function (DUF803) (.1) AT4G38730 291 / 2e-97 Protein of unknown function (DUF803) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015480 [exp] 492 / 4e-176 AT1G71900 548 / 0.0 Protein of unknown function (DUF803) (.1) Lus10006072 [exp] 374 / 5e-130 AT1G71900 503 / 0.0 Protein of unknown function (DUF803) (.1) Lus10012716 [exp] 314 / 6e-106 AT2G21120 444 / 1e-157 Protein of unknown function (DUF803) (.1) Lus10026280 [exp] 298 / 4e-99 AT2G21120 498 / 2e-178 Protein of unknown function (DUF803) (.1) Lus10016636 [exp] 283 / 7e-95 AT3G23870 312 / 2e-106 Protein of unknown function (DUF803) (.1) Lus10010893 [exp] 285 / 1e-94 AT2G21120 416 / 8e-147 Protein of unknown function (DUF803) (.1) Lus10022549 [exp] 283 / 7e-94 AT4G13800 408 / 2e-143 Protein of unknown function (DUF803) (.1) Lus10042393 [exp] 211 / 2e-66 AT4G38730 424 / 2e-150 Protein of unknown function (DUF803) (.1) Lus10015481 [exp] 134 / 1e-37 AT5G49940 286 / 3e-98 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G009700 [exp] 463 / 1e-164 AT1G71900 463 / 9e-165 Protein of unknown function (DUF803) (.1) Potri.019G084600 [exp] 412 / 1e-144 AT1G71900 423 / 5e-149 Protein of unknown function (DUF803) (.1) Potri.013G114100 [exp] 400 / 5e-140 AT1G71900 439 / 4e-155 Protein of unknown function (DUF803) (.1) Potri.001G318700 [exp] 342 / 3e-117 AT4G13800 379 / 8e-132 Protein of unknown function (DUF803) (.1) Potri.009G047400 [exp] 330 / 3e-112 AT1G34470 414 / 5e-145 Protein of unknown function (DUF803) (.1) Potri.001G253100 [exp] 325 / 4e-110 AT1G34470 379 / 6e-131 Protein of unknown function (DUF803) (.1) Potri.001G305700 [exp] 311 / 5e-105 AT2G21120 442 / 9e-157 Protein of unknown function (DUF803) (.1) Potri.019G001100 [exp] 309 / 3e-104 AT2G21120 433 / 5e-153 Protein of unknown function (DUF803) (.1) Potri.004G168900 [exp] 276 / 4e-91 AT2G21120 488 / 6e-175 Protein of unknown function (DUF803) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF05653 [flax] [poplar] Mg_trans_NIPA Magnesium transporter NIPA
Representative CDS sequence Show only first row Show all	>Lus10019952 pacid=23156175 polypeptide=Lus10019952 locus=Lus10019952.g ID=Lus10019952.BGIv1.0 annot-version=v1.0 ATGCATGCTATGGTGGTCAACCCAGTTTGCTGCTCCGCACAACAAACCCTAGACCCTCCTTCTCCTTCTCCTTCTTTTCTCCGTCAACCTCGTTCCTGGA AGGATTCCAGTTCCTTTGGAAGTACAGTTTCCATTAGCAGGGGATTCAATCGCCCGCAGGGCATATCATGTCAGACACCTGCCTTATCTCGGAGACTAGT GATTGTAGGAGAAATAGCTAACTTTGCAGCTTACGCATTTGCACCTGCTATACTAGTTACTCCACTAGGTGCTCTGAGCATCATCATCAGTGCTGTCCTT GCACACATCATTCTAAGAGAGAGGCTTCACATTTTTGGTGTTCTTGGTTGTGCTCTTTGTGTTGTGGGTTCCATTACAATTGTCCTGCATGCTCCACAAG AACGTGGAATTGAATCTGTGATAGAGGTCTGGAATCTTGCTACAGAACCTGCTTTTCTATTCTATGCAGCCTTGGTAATCACTGCTGTCTTTGTACTCAT ATTCCAATTTATCCCTGACTACGGCCAGACCCATATTATGGTGTACATAGGAATATGCTCTCTTGTTGGCTCTTTGTCGGTCATGAGTGTTAAAGCACTT GGAATTGCAATAAAGTTGACGTTATCAGGAATGAATCAGCTGATTTATCCTCAAACGTGGGCCTTCACATTGGTGGTAGTTACTTGTGTGATTACACAAA TGAACTATCTGAACAAGGCACTCGATACCTTTAACACTGCAGTGGTATCTCCTATTTACTTTGTAATGTTCACATCGCTAACCATATTGGCTAGTGTTAT AATGTTCAAGGATTGGGATAGACAGAGCCCGACACAGATTGTTACGGAGATGTGTGGGTTTGTGACAATCTTATCAGGAACGTTTCTTCTTCACAAAACA AAAGATATGGCTGAGGGTTCACCACCCCTTCCCGTCCGACTCCCGAAGCATTCATCAGAAGAAGACGAATGTGAGAGTGAAGGCATCCCTCTGAAGCGCC AAGACGCGATGCGGCCCACTTCTCATTGA
AA sequence Show only first row Show all	>Lus10019952 pacid=23156175 polypeptide=Lus10019952 locus=Lus10019952.g ID=Lus10019952.BGIv1.0 annot-version=v1.0 MHAMVVNPVCCSAQQTLDPPSPSPSFLRQPRSWKDSSSFGSTVSISRGFNRPQGISCQTPALSRRLVIVGEIANFAAYAFAPAILVTPLGALSIIISAVL AHIILRERLHIFGVLGCALCVVGSITIVLHAPQERGIESVIEVWNLATEPAFLFYAALVITAVFVLIFQFIPDYGQTHIMVYIGICSLVGSLSVMSVKAL GIAIKLTLSGMNQLIYPQTWAFTLVVVTCVITQMNYLNKALDTFNTAVVSPIYFVMFTSLTILASVIMFKDWDRQSPTQIVTEMCGFVTILSGTFLLHKT KDMAEGSPPLPVRLPKHSSEEDECESEGIPLKRQDAMRPTSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71900			Protein of unknown function (D...		Lus10019952 [exp]	0	1
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10011863 [exp]	2.0	0.8597
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10039914 [exp]	5.5	0.8557
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Lus10010513 [exp]	8.7	0.8517
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10024188 [exp]	8.8	0.8190
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10014493 [exp]	9.6	0.8347
AT5G45030			Trypsin family protein (.1.2)		Lus10036208 [exp]	9.8	0.7956
AT5G60750			CAAX amino terminal protease f...		Lus10017536 [exp]	10.4	0.8226
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10022833 [exp]	11.2	0.8255
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10028287 [exp]	13.5	0.8188
AT2G42690			alpha/beta-Hydrolases superfam...		Lus10041967 [exp]	14.3	0.8195

Compare expression of checked genes

Lus10019952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.