Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58070 49 / 2e-06 unknown protein AT1G75720 43 / 9e-05 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015482 [exp] 222 / 8e-72 AT1G58070 108 / 6e-28 unknown protein Lus10028461 [exp] 41 / 0.0006 AT2G17940 104 / 3e-27 Plant protein of unknown function (DUF827) (.1) Lus10024335 [exp] 40 / 0.0008 AT1G75720 117 / 8e-33 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G009400 [exp] 55 / 1e-08 AT1G58070 48 / 1e-06 unknown protein Potri.004G222800 [exp] 53 / 5e-08 AT1G58070 60 / 1e-10 unknown protein Potri.019G021000 [exp] 50 / 4e-07 AT1G75720 42 / 8e-05 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.002G023000 [exp] 41 / 0.0003 AT1G75720 108 / 2e-29 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.005G114400 [exp] 40 / 0.0007 AT2G17940 111 / 2e-30 Plant protein of unknown function (DUF827) (.1) Potri.005G238500 [exp] 40 / 0.0008 AT1G75720 82 / 3e-19 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019953 pacid=23156111 polypeptide=Lus10019953 locus=Lus10019953.g ID=Lus10019953.BGIv1.0 annot-version=v1.0 ATGGACGTCGACGCCGCCGACGATAGTACCGCTAGCAACGGCGGCTGGCCCAAAATAATCAGCAAACACAACTCCTCCTCCGTGGACACTTCCCGCCCAT TCAACTCCGTCAAGGAAGCCGTCGCCATCTTCGGCGAACGCATCCTTGTCCCTGGAATTTACCAGTCTACCCCCCATCCTCCTCCTCCTACCACCACTTC TCCCTCCTCCTGGAAGTCCGCCTCCGCTTCCGCTTCCCCTTTTAACAATTATTCCTCTTTTACCCCTACCAATAATAATAATATTACCATCATTCCTGAT GATGATGATGATCATCAACAACAAGGTTTTCCAAACGACGACGTGGCGATCATGGAGAGCGTGAAGAGGCTGGAAGCCGAGCTGGAAGAGACCAAGGCGG AGCTCAAGCAGCTCATGGAGAGAGGCTGTGAGACCGAGATCGAGCTGGCTTCGTTGAACGCTGAGCTCCACAAGAACATGTCCAAGCTGGCACAGGCTGA GGCCGACGCCGCCAGGAAGGCGGCGGACGACAAGATGGTGGCGGCGGAGGTGAACTCGCCGACATTGGCTCAGATATTGAACCTTGGAGCGGAGTTGGAG AGTGGTGGGTATTACAGTAATTTCGGATGGAATAATAATTCTAATAACAAAACGACCAAGGCGGCGGCGGAGAGTATCGGCTGGAATACGAAGAAGAAGA AGAAGAAGATGAAGCCTATTGTTCCTTTAGTTGGGGATTTGCTTTGGATAATGAAGAAGAAGAACAGTAGCAAGTCTGATCATAACAACCCACTTTATGC TTCTCCTAATATTTTCTGA
AA sequence Show only first row Show all	>Lus10019953 pacid=23156111 polypeptide=Lus10019953 locus=Lus10019953.g ID=Lus10019953.BGIv1.0 annot-version=v1.0 MDVDAADDSTASNGGWPKIISKHNSSSVDTSRPFNSVKEAVAIFGERILVPGIYQSTPHPPPPTTTSPSSWKSASASASPFNNYSSFTPTNNNNITIIPD DDDDHQQQGFPNDDVAIMESVKRLEAELEETKAELKQLMERGCETEIELASLNAELHKNMSKLAQAEADAARKAADDKMVAAEVNSPTLAQILNLGAELE SGGYYSNFGWNNNSNNKTTKAAAESIGWNTKKKKKKMKPIVPLVGDLLWIMKKKNSSKSDHNNPLYASPNIF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58070			unknown protein		Lus10019953 [exp]	0	1
AT5G07220		ATBAG3	BCL-2-associated athanogene 3 ...		Lus10023279 [exp]	1.0	0.9915
AT2G04305			Magnesium transporter CorA-lik...		Lus10010751 [exp]	1.4	0.9892
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032593 [exp]	2.4	0.9891
AT2G03200			Eukaryotic aspartyl protease f...		Lus10025702 [exp]	3.5	0.9859
AT5G61350			Protein kinase superfamily pro...		Lus10000562 [exp]	4.5	0.9748
AT5G61750			RmlC-like cupins superfamily p...		Lus10022071 [exp]	4.5	0.9851
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025775 [exp]	4.7	0.9720
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10009254 [exp]	6.0	0.9830
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029638 [exp]	6.7	0.9752
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10029145 [exp]	7.1	0.9689

Compare expression of checked genes

Lus10019953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.