Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30610 719 / 0 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 630 / 0 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G24010 612 / 0 SCPL23 serine carboxypeptidase-like 23 (.1) AT3G02110 592 / 0 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G35780 542 / 0 SCPL26 serine carboxypeptidase-like 26 (.1) AT3G07990 523 / 0 SCPL27 serine carboxypeptidase-like 27 (.1) AT4G30810 481 / 2e-167 SCPL29 serine carboxypeptidase-like 29 (.1) AT5G23210 471 / 3e-163 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT2G35770 455 / 2e-157 SCPL28 serine carboxypeptidase-like 28 (.1) AT3G63470 452 / 1e-155 SCPL40 serine carboxypeptidase-like 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015489 [exp] 904 / 0 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015382 [exp] 603 / 0 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10023505 [exp] 522 / 0 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10040387 [exp] 521 / 0 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10041412 [exp] 483 / 2e-167 AT2G35770 580 / 0.0 serine carboxypeptidase-like 28 (.1) Lus10017391 [exp] 480 / 1e-166 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10010190 [exp] 478 / 6e-166 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10011213 [exp] 434 / 5e-149 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10037810 [exp] 429 / 1e-146 AT3G17180 565 / 0.0 serine carboxypeptidase-like 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G183200 [exp] 748 / 0 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G105700 [exp] 718 / 0 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.017G094100 [exp] 613 / 0 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.004G120100 [exp] 612 / 0 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.008G041800 [exp] 533 / 0 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.010G220100 [exp] 532 / 0 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G041700 [exp] 473 / 1e-164 AT2G35770 608 / 0.0 serine carboxypeptidase-like 28 (.1) Potri.010G220200 [exp] 466 / 8e-162 AT3G07990 600 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.018G103100 [exp] 466 / 1e-161 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1) Potri.005G091700 [exp] 462 / 4e-160 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10019954 pacid=23156192 polypeptide=Lus10019954 locus=Lus10019954.g ID=Lus10019954.BGIv1.0 annot-version=v1.0 ATGGCTGTTTCAACAAGCAGCCATTGTCGTCGTCACTACTATTATTGCTACAACTACAATCATAATAACAATCTTGTCCTAATTTCCTTTTCCTTGTTCT TCCTCCTCATCTCTGCTTCTAACTCTGCCGCCGTCGGGCTAACGACGAGAGAGCAGGAACATGACAGAATCTCCTCCCTTCCCGGTCAGCCTGCGGTGAC ATTCTCACAATTCTCCGGCTACGTCACGGTGAACGAAGAACACGGGCGTGCATTGTTCTACTGGCTCACCGAAGCTCCACCTTCTTCAAATCCCAAGCCA CTACTCCTCTGGCTCAATGGAGGACCAGGGTGTTCATCTGTGGCATATGGAGCATCAGAAGAGATAGGTCCCTTCAGGATTAACAAAACTACATCTACCC TCTTTCTCAACAAATATTCCTGGAACAGAGAAGCAAATATTCTGTTCCTGGAATCACCTGCTGGAGTTGGATTTTCCTACACAAACACAACCTCTAACCT CAAAGATTCTGGAGATGCAAGGACATCTCAGGATGCTTTGATCTTCCTCCTTAAATGGATGTCAAGATTCCCACAGTACAAATTCAGAGACTTCTACATT GCTGGGGAAAGTTATGCTGGACATTATGTACCCCAGCTAGCTAAGAGAATCCACGACTACAACAAAGCACACTCCAATCCCATCATCAACCTCAAAGGAA TCATGTTAGGGAATGCTGTGACGGATAATTACTACGACGGGATTGGCACCGTGACATATTGGTGGAGTCACTCCATGATCTCGGATCGATCTTACAGATC GATCCTCAACCATTGCGATTTCGGGGAGGATAAAACGTCGACAAAATGCGACAATGCAGTGAGCTACGCCATGAACAGGGAGTTTGGCGCCATTGATCAG TACAGCATTTACACGCCGTCTTGTTTGCATCCCAAGAGCGGCGAGAACGGCACAAGGACGAGGTTTCTCAGGATGAAGAATACGGTACTGCATAGGCCGA TTTCAGGCTATGATCCGTGTACAGAGAGATATGCCGAGAAGTATTACAATCGGCAGGATGTTCAGAGGGCTATGCACGCTAATGTGACTGGGATGATCCC ATACAAATGGACTGCTTGCAGTGATATGCTGATTAAGTATTGGAAGGACTCAGATGCATCAATGTTGCCTACATACAAGGAGCTGATTGCTGCTGGTTTG AGGATCTGGGTTTTCAGTGGGGATACAGATTCAGTAGTTCCAGTGACAGCCACAAGGTTCTCCATCAGCCATCTCAACCTGACTGTCAAAACCAGATGGT ATCCATGGAAATCTGGAAACCAGGTTGGGGGATGGACAGAAGAGTATGAAGGGCTGACATTTGCAACAGTGAGGGGAGCAGGGCATGAAGTTCCTTTATT TCAACCAAGAAGGGCTTTCATTCTTTTCACATCTTTCTTGGCTGGCAAACAACTACCAAGATCTTGA
AA sequence Show only first row Show all	>Lus10019954 pacid=23156192 polypeptide=Lus10019954 locus=Lus10019954.g ID=Lus10019954.BGIv1.0 annot-version=v1.0 MAVSTSSHCRRHYYYCYNYNHNNNLVLISFSLFFLLISASNSAAVGLTTREQEHDRISSLPGQPAVTFSQFSGYVTVNEEHGRALFYWLTEAPPSSNPKP LLLWLNGGPGCSSVAYGASEEIGPFRINKTTSTLFLNKYSWNREANILFLESPAGVGFSYTNTTSNLKDSGDARTSQDALIFLLKWMSRFPQYKFRDFYI AGESYAGHYVPQLAKRIHDYNKAHSNPIINLKGIMLGNAVTDNYYDGIGTVTYWWSHSMISDRSYRSILNHCDFGEDKTSTKCDNAVSYAMNREFGAIDQ YSIYTPSCLHPKSGENGTRTRFLRMKNTVLHRPISGYDPCTERYAEKYYNRQDVQRAMHANVTGMIPYKWTACSDMLIKYWKDSDASMLPTYKELIAAGL RIWVFSGDTDSVVPVTATRFSISHLNLTVKTRWYPWKSGNQVGGWTEEYEGLTFATVRGAGHEVPLFQPRRAFILFTSFLAGKQLPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Lus10019954 [exp]	0	1
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Lus10015489 [exp]	1.0	0.9029
AT3G05470			Actin-binding FH2 (formin homo...		Lus10031496 [exp]	3.7	0.8960
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Lus10020267 [exp]	4.9	0.8863
AT5G01870			Bifunctional inhibitor/lipid-t...		Lus10025148 [exp]	6.0	0.8956
AT3G05470			Actin-binding FH2 (formin homo...		Lus10015175 [exp]	6.7	0.8914
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10036517 [exp]	9.6	0.8929
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Lus10021303 [exp]	11.8	0.8552
AT5G65590	DOF	AtDof5,7	Dof-type zinc finger DNA-bindi...		Lus10025707 [exp]	14.9	0.8909
AT1G31335			unknown protein		Lus10038328 [exp]	17.5	0.8825
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10003565 [exp]	18.0	0.8120

Compare expression of checked genes

Lus10019954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.