Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24330 220 / 1e-69 Protein of unknown function (DUF1682) (.1) AT5G49945 211 / 4e-66 Protein of unknown function (DUF1682) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015491 [exp] 306 / 8e-107 AT4G24330 343 / 2e-117 Protein of unknown function (DUF1682) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223000 [exp] 213 / 3e-67 AT4G24330 479 / 8e-167 Protein of unknown function (DUF1682) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07946 [flax] [poplar] DUF1682 Protein of unknown function (DUF1682)
Representative CDS sequence Show only first row Show all	>Lus10019957 pacid=23156114 polypeptide=Lus10019957 locus=Lus10019957.g ID=Lus10019957.BGIv1.0 annot-version=v1.0 ATGGACCAAGTGATTTTCGCAATGGCCAAGAAGAAAGCTGCCAAAGCTATGCAGAAGGAGGTTAGGGATTTGCAGAGGTTTGCTGGCCTTCTGCCCCATC AGGCCCATGTGAAGAAATGGGTCATTGAGGATCTCGGAGTTGTTTCTGAATCTAAGGAGGTTGCTGGGGACTTGATCACTGATGCTGTCCTTGAACAGGT ATTCGGAGAAAAAGCTTTTGGAAAGTTTGGAAAGGGTTTCATCTCGATGCATTTCTCAGACCAACACCCTGGTGCACACAAGAAAATGCTGTTGTTCAAG TTTGCTCTGCCCGATGCTAGCAATATGGCGGATATGACCAGATTGGTGGCTTTGGTACCTTACTACATCGATCTGATTGGCCGATACAAGTTGAGTCCGC AGGCACGGTCTAAAACGGAGGCAGCGAGAAACAAAGCTGCACAAGAAGCATTCAAAGAACTTCAGAATGCAAGACAGGAAGCGTTGTTGAGAAAGAAGGC GGAGAGGAAGGAGGAAGCTGAATCGAAACTAAGCGCAGAGGCCATCCGCAGAAAACAAGAGAAAGATCGTGCTCGTCAGACCAAAAGAGCAATGCCCAAG ATGAAGATGTCACGTAGATGA
AA sequence Show only first row Show all	>Lus10019957 pacid=23156114 polypeptide=Lus10019957 locus=Lus10019957.g ID=Lus10019957.BGIv1.0 annot-version=v1.0 MDQVIFAMAKKKAAKAMQKEVRDLQRFAGLLPHQAHVKKWVIEDLGVVSESKEVAGDLITDAVLEQVFGEKAFGKFGKGFISMHFSDQHPGAHKKMLLFK FALPDASNMADMTRLVALVPYYIDLIGRYKLSPQARSKTEAARNKAAQEAFKELQNARQEALLRKKAERKEEAESKLSAEAIRRKQEKDRARQTKRAMPK MKMSRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24330			Protein of unknown function (D...		Lus10019957 [exp]	0	1
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10001959 [exp]	1.0	0.8943
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031278 [exp]	6.8	0.8629
AT4G05400			copper ion binding (.1.2)		Lus10027072 [exp]	12.0	0.8041
AT4G23490			Protein of unknown function (D...		Lus10024662 [exp]	12.2	0.8542
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10005009 [exp]	12.6	0.8583
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10026404 [exp]	15.5	0.8332
AT5G05480			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017437 [exp]	16.7	0.8041
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10016418 [exp]	17.8	0.7581
AT3G44150			unknown protein		Lus10016181 [exp]	17.9	0.8362
AT4G02450			HSP20-like chaperones superfam...		Lus10026136 [exp]	19.1	0.7747

Compare expression of checked genes

Lus10019957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.