Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57930 484 / 2e-169 APO2, EMB1629 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT1G64810 297 / 2e-96 APO1 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT5G61930 267 / 5e-85 APO3 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT3G21740 114 / 6e-28 APO4 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039122 [exp] 282 / 1e-90 AT1G64810 567 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10038736 [exp] 278 / 7e-89 AT1G64810 562 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10005547 [exp] 251 / 9e-79 AT5G61930 306 / 4e-101 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10041933 [exp] 250 / 1e-78 AT5G61930 304 / 2e-100 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10004105 [exp] 249 / 3e-78 AT5G61930 473 / 3e-167 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10013360 [exp] 255 / 2e-76 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10041934 [exp] 137 / 2e-38 AT5G61930 162 / 4e-49 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10039659 [exp] 113 / 1e-27 AT3G21740 385 / 4e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) Lus10027182 [exp] 109 / 9e-27 AT3G21740 240 / 4e-78 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G183900 [exp] 522 / 0 AT5G57930 517 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.018G106400 [exp] 512 / 3e-180 AT5G57930 510 / 8e-180 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.016G001400 [exp] 289 / 3e-93 AT1G64810 535 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.015G106200 [exp] 278 / 3e-89 AT5G61930 500 / 3e-177 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.017G037200 [exp] 111 / 3e-27 AT3G21740 384 / 5e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) Potri.018G105600 [exp] 49 / 1e-06 AT2G24020 240 / 1e-81 Uncharacterised BCR, YbaB family COG0718 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05634 [flax] [poplar] APO_RNA-bind APO RNA-binding
Representative CDS sequence Show only first row Show all	>Lus10019959 pacid=23156149 polypeptide=Lus10019959 locus=Lus10019959.g ID=Lus10019959.BGIv1.0 annot-version=v1.0 ATGGCAGCTCAGCTGGCCACCGTCAACGGACTCTGCGTTGGGAGAACTTACCCTGCTTCATCCATGCCTGCAGGGAAACTAAATGCAACTTCAGTTGGTA ATTTGACTGTATTCTGGCCGAGCAAACAACGTCAGCGTCAATCACTCCGGGTCATTGGTCTATTTGGTGGGAAGAAAGATGGCGATGATGCATCTTCAAA GTTGACTTCTTTACAGCATAATAAACGGAAACTGCCTGTTTTCTTTACCACTACATCAAGGAAGTTGCGGCAGCAACGTGCATTCACTGTGACGAATGAG TACTCTCAAAATGCCGATTTTCCGAGAACCTATGGGAAAAAGGAGAAGAAGCCATTTCCAATACCAGTAGTGGAGTTGAGGAGAGCTGCCAGGGAGAGAC TCAAGAACAAGAACAAGAACGACAAGCCGAAAGGACGACCCCCACCTCCAAAGCAAGGGTTGGTCGTACAAAGTCTCATCCCTCTTGCTTACGAAGTTTA CAATGCGAGGATCACGCTCATTAACAATATCAAAAGATTGTTGAAAGTGGTACCCGTCCACGCTTGCGGGTGGTGTGATGAAATTCATGTTGGGCCAGAG GGACATCCATTCAGGACGTGCAGAGGCAAGTATACGAGTGTCCGGAAGGGTCTTCATGAGTGGACCAGTGCCGTTGTCGAGGACATAATTGTGCAGGTAG AATCCTACCATCTGTATGATCGTCTTGGCAATCGAATACGTCACGATCAAAGATTCTCGATTCCCAGAATCCCGGCAGTGGTGGAGCTCTGTATCCAAGC TGGTGTAGACCTTCCCGAATTCCCTACAAAAAGGAGAAGAAAGCCGGTCATTTGGATTGGGAGAAAGGAATTCGTCGATGCAGACGAAAGCGAACTTCCT GATCCAGTCCCCGAACCTCCTCTGAAGCCACTGTTGACAGAGATACCGGACTCAGAAGTCGTTGCCCCATCTAGTCAAGAAGAAACAACCTTGCTTTCCG AAGAGACCTTAGCGGCTTGGGAGAAAATGACGAAAGGTTGTAACAGACTTAGGAAAATGTATACTGTTAGAGTCTGTGGGTACTGCCCGGAGGTCCATGT CGGACCAAATGGGCACAAGGTGCAAATCTGTGGAGCACACAAGCACCAGCAACGAAACGGGCAGCATGGTTGGCAGGCTGCGGTGCTGAACGACCTAATA CCACCAAGATTCGTGTGGCATCTCCCTGACGGGAGTGGGCAGCAATTGAAACGTGAACTGAAAAGCTTCTATGGTAAGGCTCCTGCTGTTGTGGAGCTGT GCATCCAAGGTGGGGCTCAAGTGCCTGAAGAGTACAAAACAACAATGAGGTTGGACATTGGGATTCCTACTAACGGTAAAGAAGCTGAAATGGTTGTTTG A
AA sequence Show only first row Show all	>Lus10019959 pacid=23156149 polypeptide=Lus10019959 locus=Lus10019959.g ID=Lus10019959.BGIv1.0 annot-version=v1.0 MAAQLATVNGLCVGRTYPASSMPAGKLNATSVGNLTVFWPSKQRQRQSLRVIGLFGGKKDGDDASSKLTSLQHNKRKLPVFFTTTSRKLRQQRAFTVTNE YSQNADFPRTYGKKEKKPFPIPVVELRRAARERLKNKNKNDKPKGRPPPPKQGLVVQSLIPLAYEVYNARITLINNIKRLLKVVPVHACGWCDEIHVGPE GHPFRTCRGKYTSVRKGLHEWTSAVVEDIIVQVESYHLYDRLGNRIRHDQRFSIPRIPAVVELCIQAGVDLPEFPTKRRRKPVIWIGRKEFVDADESELP DPVPEPPLKPLLTEIPDSEVVAPSSQEETTLLSEETLAAWEKMTKGCNRLRKMYTVRVCGYCPEVHVGPNGHKVQICGAHKHQQRNGQHGWQAAVLNDLI PPRFVWHLPDGSGQQLKRELKSFYGKAPAVVELCIQGGAQVPEEYKTTMRLDIGIPTNGKEAEMVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Lus10019959 [exp]	0	1
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Lus10039467 [exp]	3.5	0.9264
AT1G24610			Rubisco methyltransferase fami...		Lus10021783 [exp]	5.7	0.9262
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10027815 [exp]	8.0	0.9221
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10041566 [exp]	8.5	0.9188
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	11.5	0.9224
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031160 [exp]	11.7	0.9205
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10017156 [exp]	12.0	0.8962
AT5G15700			DNA/RNA polymerases superfamil...		Lus10031952 [exp]	13.6	0.9207
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031566 [exp]	15.4	0.8977
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	16.7	0.9193

Compare expression of checked genes

Lus10019959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.