Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23945 252 / 3e-79 Eukaryotic aspartyl protease family protein (.1) AT4G30030 223 / 1e-68 Eukaryotic aspartyl protease family protein (.1) AT4G30040 206 / 6e-62 Eukaryotic aspartyl protease family protein (.1) AT2G28040 143 / 1e-38 Eukaryotic aspartyl protease family protein (.1) AT2G28030 140 / 2e-37 Eukaryotic aspartyl protease family protein (.1) AT2G28010 139 / 4e-37 Eukaryotic aspartyl protease family protein (.1) AT2G35615 137 / 4e-36 Eukaryotic aspartyl protease family protein (.1) AT5G33340 137 / 5e-36 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G31450 137 / 6e-36 Eukaryotic aspartyl protease family protein (.1) AT4G12920 131 / 3e-34 UND UNDEAD, Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015487 [exp] 710 / 0 AT2G23945 214 / 7e-65 Eukaryotic aspartyl protease family protein (.1) Lus10011615 [exp] 292 / 7e-95 AT2G23945 224 / 5e-68 Eukaryotic aspartyl protease family protein (.1) Lus10023451 [exp] 265 / 3e-84 AT2G23945 232 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10031450 [exp] 261 / 7e-83 AT4G30030 231 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10015486 [exp] 258 / 2e-80 AT2G23945 248 / 3e-76 Eukaryotic aspartyl protease family protein (.1) Lus10031449 [exp] 243 / 8e-76 AT2G23945 219 / 3e-66 Eukaryotic aspartyl protease family protein (.1) Lus10002276 [exp] 226 / 5e-69 AT2G23945 206 / 2e-61 Eukaryotic aspartyl protease family protein (.1) Lus10002275 [exp] 193 / 5e-57 AT2G23945 164 / 7e-46 Eukaryotic aspartyl protease family protein (.1) Lus10004064 [exp] 181 / 2e-50 AT4G30040 156 / 3e-41 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179500 [exp] 267 / 3e-85 AT2G23945 412 / 3e-141 Eukaryotic aspartyl protease family protein (.1) Potri.018G106500 [exp] 147 / 3e-40 AT4G30030 150 / 2e-41 Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 137 / 3e-36 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 134 / 1e-34 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 132 / 4e-34 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 132 / 5e-34 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.017G131800 [exp] 129 / 5e-33 AT1G66180 570 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 127 / 2e-32 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.004G085000 [exp] 126 / 6e-32 AT1G66180 605 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 122 / 2e-30 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10019960 pacid=23156174 polypeptide=Lus10019960 locus=Lus10019960.g ID=Lus10019960.BGIv1.0 annot-version=v1.0 ATGCCAACTTCCATTGGCATTCTGCTCCTTGTCACAGTAATAATAACTTCAAACTCTAAGTGCGTTGACTCATATCGAATAACCCTGAAACTTATCCACC ACAACTCAATCTTCTCCCCCACGGCAGTACTGAACAAATCATCCATACAACAATTGGTAGAAGCTTCTTCTTCTACAGAAAAGGAACATATAGGAGCAAA CCTTATCCCAGGTAGCCATTCAATCTACTACGTCAATTTCTCAATTGGGCAGCCGCCGGTGCCTCAGCTGGCGGTAATGGACACAGGGAGTAGCTTGCTG TGGGTCAAATGCCTTCCTTGCTACCCATGTTCACCCACTTCCAACACCCGCTTCTTCGATCCCTCTATGTCCTCCACTTTCCAACCCAAGGCGTGTGACC CCACCTGCCGGAGCTGCAATCCGACCACGAACCAATGCGAGTACAACATACAATACGTCGGCGCGCCTTCATCTGAAGGAATCATAGCCAAAGAACAGCT GACATTCCCCACGTGGGACAATGGATACAGTACCGTGCCGGATGTACAATTCGGGTGCTGTCGGAAAACTGAAGATCTACCGAGGGAGTCTCACATGACC GGAGTAATGGGTCTCGGAGCAGAACCCGATTCGCTGGTTTGGCGGGTCGGCAAGCCGAGATTTTCGTATTGCATAGGGGACGTCTTCGACCCGTTTTACG ATTTCAATCGGTTGGAAATCGGAGAAGGGGCGGTGATGGAAGGTGTTTGGACGCCGTTAACGATCGAGAAAGGCCTGTACTATGTAACCGTGGAACGAAT TAGCCTTGGTGGGTCCACTCTGGATATACCCGATTCCGCTTTCAAGAAAACCCCCGGCGTGGACGACGGGGTCATGATCGACACCGGAGCACAGTACACA TACCTGAAGAAAGAAGCATTCGAAGTGGTGGAATATGCAGTCCGTGACCAGCTGAGGGGCACGAAATGGAAGCGAGTGTGGATACAACAAGCAAATGGAA GGATTTGCTTCGGTGGGAGAGTCGCTGAAGTCGCTCAAAGTTTCCCGCTTCTGGGTATCCATTTCGAGGGCGGGGCGGACCTGTACCTCGACGGATTCGG AACCTTCGTGCAACTTAACTGGGACACCTTCTGCTTGGCATTCCTTGAAACTTCTGAGGGTGAAGACTCTAGTTGCATAGGTATCTTGGCTCAGCAGAAC TACAACGTTGGCTTTGATCTTGTTGATAAGAGAGTCTATTTCCAGAGGATTGCTTGTGAGGATCTTCATCTATAA
AA sequence Show only first row Show all	>Lus10019960 pacid=23156174 polypeptide=Lus10019960 locus=Lus10019960.g ID=Lus10019960.BGIv1.0 annot-version=v1.0 MPTSIGILLLVTVIITSNSKCVDSYRITLKLIHHNSIFSPTAVLNKSSIQQLVEASSSTEKEHIGANLIPGSHSIYYVNFSIGQPPVPQLAVMDTGSSLL WVKCLPCYPCSPTSNTRFFDPSMSSTFQPKACDPTCRSCNPTTNQCEYNIQYVGAPSSEGIIAKEQLTFPTWDNGYSTVPDVQFGCCRKTEDLPRESHMT GVMGLGAEPDSLVWRVGKPRFSYCIGDVFDPFYDFNRLEIGEGAVMEGVWTPLTIEKGLYYVTVERISLGGSTLDIPDSAFKKTPGVDDGVMIDTGAQYT YLKKEAFEVVEYAVRDQLRGTKWKRVWIQQANGRICFGGRVAEVAQSFPLLGIHFEGGADLYLDGFGTFVQLNWDTFCLAFLETSEGEDSSCIGILAQQN YNVGFDLVDKRVYFQRIACEDLHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23945			Eukaryotic aspartyl protease f...		Lus10019960 [exp]	0	1
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	4.4	0.8759
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	6.8	0.8664
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	8.3	0.8664
					Lus10011276 [exp]	9.7	0.8519
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	9.8	0.8553
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	12.5	0.8514
					Lus10011637 [exp]	13.0	0.8464
AT2G29060	GRAS		GRAS family transcription fact...		Lus10037752 [exp]	13.5	0.8245
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	14.1	0.8460
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	15.2	0.8362

Compare expression of checked genes

Lus10019960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.