Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23945 89 / 2e-21 Eukaryotic aspartyl protease family protein (.1) AT4G30030 84 / 8e-20 Eukaryotic aspartyl protease family protein (.1) AT4G30040 74 / 5e-16 Eukaryotic aspartyl protease family protein (.1) AT4G12920 54 / 5e-09 UND UNDEAD, Eukaryotic aspartyl protease family protein (.1) AT2G28030 43 / 2e-05 Eukaryotic aspartyl protease family protein (.1) AT2G28040 42 / 7e-05 Eukaryotic aspartyl protease family protein (.1) AT3G50050 42 / 8e-05 Eukaryotic aspartyl protease family protein (.1) AT2G17760 40 / 0.0003 Eukaryotic aspartyl protease family protein (.1) AT2G28010 39 / 0.0007 Eukaryotic aspartyl protease family protein (.1) AT3G25700 39 / 0.0008 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015486 [exp] 265 / 2e-87 AT2G23945 248 / 3e-76 Eukaryotic aspartyl protease family protein (.1) Lus10023451 [exp] 134 / 3e-38 AT2G23945 232 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10002275 [exp] 130 / 1e-36 AT2G23945 164 / 7e-46 Eukaryotic aspartyl protease family protein (.1) Lus10004064 [exp] 128 / 5e-35 AT4G30040 156 / 3e-41 Eukaryotic aspartyl protease family protein (.1) Lus10002276 [exp] 119 / 2e-32 AT2G23945 206 / 2e-61 Eukaryotic aspartyl protease family protein (.1) Lus10031450 [exp] 116 / 2e-31 AT4G30030 231 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10031449 [exp] 115 / 6e-31 AT2G23945 219 / 3e-66 Eukaryotic aspartyl protease family protein (.1) Lus10011615 [exp] 115 / 6e-31 AT2G23945 224 / 5e-68 Eukaryotic aspartyl protease family protein (.1) Lus10019960 [exp] 87 / 9e-21 AT2G23945 256 / 5e-81 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179500 [exp] 92 / 2e-22 AT2G23945 412 / 3e-141 Eukaryotic aspartyl protease family protein (.1) Potri.018G106500 [exp] 61 / 1e-11 AT4G30030 150 / 2e-41 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 46 / 2e-06 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 40 / 0.0002 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 39 / 0.0005 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019961 pacid=23156147 polypeptide=Lus10019961 locus=Lus10019961.g ID=Lus10019961.BGIv1.0 annot-version=v1.0 ATGTTCAAGGTAGAATACGCCGGTGGACAGAGTTCGGAAGGAGTCTACGCCACCGAACAACTAACCTTTCGAACCTCCGACGACGGGACAATCACTGTCC CGAAACTTCTATTTGGCTGCACTATTCTGGAGACTGGGACCAACGATCTCGATCCACGAGTCAACGGGATACTAGGATTGGGTACATGGGTTCCTGGTAT GCCGCGAGGAGCAAAATCCTTGGTGAACCAATTGGGGGCCAAATTCTCGTATTGTGTCGGTAGCTTATCCGACATTACATACCCTTATAACCAATTATCT TTCGGTGATGCTGTTGATTTAGCCGGCGACCAAACTCCGTTCTACTTCAGAGAAGGCAATTACTACATGCACCTCGTGAATATCAACTTAGGAGGACTAG TATTATTTACTTATGCTGTAGTATCAAATATTTTCTTCTAA
AA sequence Show only first row Show all	>Lus10019961 pacid=23156147 polypeptide=Lus10019961 locus=Lus10019961.g ID=Lus10019961.BGIv1.0 annot-version=v1.0 MFKVEYAGGQSSEGVYATEQLTFRTSDDGTITVPKLLFGCTILETGTNDLDPRVNGILGLGTWVPGMPRGAKSLVNQLGAKFSYCVGSLSDITYPYNQLS FGDAVDLAGDQTPFYFREGNYYMHLVNINLGGLVLFTYAVVSNIFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23945			Eukaryotic aspartyl protease f...		Lus10019961 [exp]	0	1
AT5G04885			Glycosyl hydrolase family prot...		Lus10005706 [exp]	1.0	0.8758
					Lus10001379 [exp]	1.4	0.8704
AT5G55690	MADS		MADS-box transcription factor ...		Lus10019819 [exp]	2.0	0.7349
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10024816 [exp]	8.3	0.7381
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10007410 [exp]	8.9	0.7276
AT3G17152			Plant invertase/pectin methyle...		Lus10017077 [exp]	12.0	0.6942
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	14.5	0.7003
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	15.7	0.7003
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	16.7	0.7003
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Lus10026027 [exp]	17.0	0.6664

Compare expression of checked genes

Lus10019961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.