Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23890 860 / 0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) AT4G30490 586 / 0 AFG1-like ATPase family protein (.1) AT4G28070 583 / 0 AFG1-like ATPase family protein (.1.2) AT5G48960 183 / 3e-48 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) AT1G75210 168 / 2e-43 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) AT2G25530 154 / 1e-38 AFG1-like ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015485 [exp] 1866 / 0 AT2G23890 790 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Lus10002025 [exp] 162 / 2e-41 AT2G25530 810 / 0.0 AFG1-like ATPase family protein (.1) Lus10032712 [exp] 160 / 7e-41 AT1G75210 900 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G100600 [exp] 882 / 0 AT2G23890 871 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Potri.018G100900 [exp] 601 / 0 AT4G28070 713 / 0.0 AFG1-like ATPase family protein (.1.2) Potri.008G205900 [exp] 164 / 6e-42 AT5G48960 910 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Potri.006G252300 [exp] 162 / 1e-41 AT2G25530 777 / 0.0 AFG1-like ATPase family protein (.1) Potri.010G002900 [exp] 162 / 2e-41 AT5G48960 902 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Potri.014G196700 [exp] 159 / 1e-40 AT1G75210 869 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF03969 [flax] [poplar] AFG1_ATPase AFG1-like ATPase CL0137 [flax] [poplar] HAD PF05761 [flax] [poplar] 5_nucleotid 5' nucleotidase family
Representative CDS sequence Show only first row Show all	>Lus10019962 pacid=23156225 polypeptide=Lus10019962 locus=Lus10019962.g ID=Lus10019962.BGIv1.0 annot-version=v1.0 ATGAGAAGAAGTATTCGATCTGTACGGCAATTAGTTTCTACTGTTGGGACTAAAGAATCGACCAACTCCTCAGCTGGTTTGGTGGGAATAAGAACAAGGC AGCAGAATTTGATACAAAGAACATCTGCTTCTTCTCTTAAAACTGACAGATTTCAGAACAGGAAATTTGCCAACTTTAGGACTCTGGCAACTGATGCTGC TGCTAGTGTCACAAGTTCAGATCTAAGGATAGCAGGGCCTCTTGTGGAGTACCAAAGAAGGATTGCTTCTGGAGACCTTGTGGATGGTGATAACTACCAG TTACGAACTTTGACTGAACTTCAAAGGCTCTTTGATGAGATTGTTGATTCTGCTGATGCCTGCAAATTGGATCGGTATGCTACGTCTGAGAAATCTACAA GACATGAATATTTAGAGGTTGAGTCACATTTGTCTGATCAAATGTCAATCAGGAAACGGTGGTTGTGGTCACGTTTCATCCCACAGTCTTCATATTCTCC TGTTAGAGGACTTTATCTTTATGGAGGTGTTGGAACCGGGAAGACCATGTTGATGGATTTGTTCTATGATCAATTGCCTTGCAGTTGGAGGAAAAAGAGG ATCCACTTTCATGACTTCATGTTGAATGTCCATAGCCGCTTGCAAGTAAGAGTCAAGTTCATACCTCTTTTACTTGAGTCACTCTTTCAAGGTCATGATG CACTTCAAACTGGGTTTGAGTTGATAGAATTCTCCTTTTCACAGAGACATAGGGGCGTGGCTGACCCACTTGAAGTTGTTGCAGGGGAGATCTCTGACGA AGCAATTCTTTTATGTTTAGATGAATTCATGGTGACTGATGTTGCTGATGCGTTGATTCTAAATCGCCTCTTTGGACATCTATTCAACAATGGTGTTATT CTTGTTGCGACATCAAATCGTAACCCGGATAAGCTATATGAAGGTGGATTGCAAAGGGATCTATTTCTTCCTTTCATTGAAACTCTGAAGGCTGAACAAG GGTTCTACTTCGTTGGGAATAATATAGCTGGCCTCCTTAAGCAGAAGTTTCAGGAATTGGTAGGCAAACACGAGGTTAGATCAGAAGAGGTTGAAGTAGT AATGGGAAGAAAATTGCAGGTCCCATTTGCTGCTGATGGATGTGCATACTTCAAATTTGAAGAATTGTGTGATAGACCCCTTGGGGCTGCAGATTATTTT GGATTGTTCAAGAGTTTCCATACATTGGCATTGGAAGGTATCCCAATCTTGGGGCTTAACAACAGAACAGCAGCGTATCGATTCGTCACGTTAATTGATG TCATGTACGAGAACAGGGCGAGACTGCTGTGCACAGCAGAAGGTACTCCATTCGAACTTTTTGAGAAGATTGTTACAATTGCTGATGCGCAGCAAATGGC ACCGAGGACCTCCGGAAGATCGAGGAGAAACGATGAGGCTGATCTTTGCGTGGATAACGAGCTTGGCTTTGCTAAAGATCGAACCATTAGTAGGCAAAGA GCGTGCTTTTCTCTGCTGGCTATACGAGAAGGTTTTGGAGGGAATTTTAGGAGTTACAGTATTGCTGCTAGTGCTTCGGCTGAAGGACTGAAATCTGAAG GTTCAGATTTTGATGATGAAGTTGCGAAGATTAGACACCAGTTTGAGGCAGCAAAGAATAGTTTTCTTTCTGTTCCCGAGTCGCTCGCTGGAATGTCTAA GATGAATCCTAAAGGCATCTATGTGAATAAGAATCTTAGATTGGATAACATTCAAGTTTACGGATTTGACTACGACTATACATTAGCCCATTACTCTTCC AACTTGCAGAGTTTGATATATGATCTTGCAAAGGAGCATATGGTGAATGAGCTGAGATATCCTGAGATATGCATGAGGTTCACATATGATCCTACATTTC CCATTAGAGGCTTATACTATGACAGGAAGAACGGGTGCCTTTTGAAGCTGGATTTCTTTGGGTCAATTGAGCCAGATGGATGCTACTTCGGTCGACGCAA GCTTAGCAGGAAGGAAATAGAAGAGATATATGGCACAAGGCATATTGGTCGTGACCAAGCACGTGGACTCGTTGGTCTAATGGATTTCTTCTGCTTTAGT GAGGCATGCCTTATCGCAGATATTGTCCAACACTTTGTAGATGCTAAGCTAGAATTTGATGCATCTTACATCTATCAAGATGTAAACCGTGCCATTCAGC ATGTTCATCGAAGCGGGTCAGCTCATAGGGGCATCCTTTCCAATCCACAAAAGTATCTGCTGAAAAATCACGAGGCCCTTCGTTTTCTTAAGATGCTGAG AGAGAAGGGGAAGAAGCTTTTCTTGCTGACCAACTCTCCTTATTACTTTGTGGATGGGGGAATGCGGTATATGCTGGAGGATTCCATTGGTTGCGGAGAC TCCTGGAGAGACCTCTTTGATGTTGTGATTGCTAAAGCCAATAAGCCAGACTTCTACACTTCTGAGCACCCATTTCGATGCTATGACACAGAAAGGGACA CTCTGGCTTTTACAAAGGTGGAGACTTTCGTACAGGATAAAATCTATTACCATGGATGCCTTAAAACCTTTCTTGAAATTACCAAGTGGCGTGGTCCAGA GGTGATTTATTTCGGTGATCACCTCTTCAGTGATCTTAGGGGACCTTCAAAGGCTGGATGGCGAACTGCTGCTATCATCCGTGAACTAGAAAATGAAATA CGTATACAGAATGGAGATCGTTACCGGTTTGAGCAGGCGAAATTCCACATCATACAAGAACTGCTAGGGAGATTGCATTCCATTGTGCCGAATAGTAACA GAAGCGAAACCTATGGCTTGCTCCTTAAGGAGCTGAATCAAAAGAGGCAAGAGGCGAGGGAGACGATGAGGAAGATGTTCAATGAGTCATTTGGGGCCAC GTTTCTCACCGACACAGGCCAAGAATCTGCATTCGCCTATCACATTCATCAATATGCAGATGTATACACCAGCAAACCTGAGAATTTTCTCCTATACCCA CCAGAGGCATGGCTTCATGTGCCTTTCGATGTCAAAATCATGCCACATCATGTCAAGGTACATGTGTTTCGTATGAATAAGCCCCTCTTTCGTCAAAGCA TTTGA
AA sequence Show only first row Show all	>Lus10019962 pacid=23156225 polypeptide=Lus10019962 locus=Lus10019962.g ID=Lus10019962.BGIv1.0 annot-version=v1.0 MRRSIRSVRQLVSTVGTKESTNSSAGLVGIRTRQQNLIQRTSASSLKTDRFQNRKFANFRTLATDAAASVTSSDLRIAGPLVEYQRRIASGDLVDGDNYQ LRTLTELQRLFDEIVDSADACKLDRYATSEKSTRHEYLEVESHLSDQMSIRKRWLWSRFIPQSSYSPVRGLYLYGGVGTGKTMLMDLFYDQLPCSWRKKR IHFHDFMLNVHSRLQVRVKFIPLLLESLFQGHDALQTGFELIEFSFSQRHRGVADPLEVVAGEISDEAILLCLDEFMVTDVADALILNRLFGHLFNNGVI LVATSNRNPDKLYEGGLQRDLFLPFIETLKAEQGFYFVGNNIAGLLKQKFQELVGKHEVRSEEVEVVMGRKLQVPFAADGCAYFKFEELCDRPLGAADYF GLFKSFHTLALEGIPILGLNNRTAAYRFVTLIDVMYENRARLLCTAEGTPFELFEKIVTIADAQQMAPRTSGRSRRNDEADLCVDNELGFAKDRTISRQR ACFSLLAIREGFGGNFRSYSIAASASAEGLKSEGSDFDDEVAKIRHQFEAAKNSFLSVPESLAGMSKMNPKGIYVNKNLRLDNIQVYGFDYDYTLAHYSS NLQSLIYDLAKEHMVNELRYPEICMRFTYDPTFPIRGLYYDRKNGCLLKLDFFGSIEPDGCYFGRRKLSRKEIEEIYGTRHIGRDQARGLVGLMDFFCFS EACLIADIVQHFVDAKLEFDASYIYQDVNRAIQHVHRSGSAHRGILSNPQKYLLKNHEALRFLKMLREKGKKLFLLTNSPYYFVDGGMRYMLEDSIGCGD SWRDLFDVVIAKANKPDFYTSEHPFRCYDTERDTLAFTKVETFVQDKIYYHGCLKTFLEITKWRGPEVIYFGDHLFSDLRGPSKAGWRTAAIIRELENEI RIQNGDRYRFEQAKFHIIQELLGRLHSIVPNSNRSETYGLLLKELNQKRQEARETMRKMFNESFGATFLTDTGQESAFAYHIHQYADVYTSKPENFLLYP PEAWLHVPFDVKIMPHHVKVHVFRMNKPLFRQSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10019962 [exp]	0	1
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10035357 [exp]	1.4	0.9055
AT1G73020			unknown protein		Lus10009732 [exp]	4.9	0.8997
AT2G26590		RPN13	regulatory particle non-ATPase...		Lus10040571 [exp]	5.2	0.8877
AT3G03560			unknown protein		Lus10005694 [exp]	6.5	0.8775
AT3G03560			unknown protein		Lus10020297 [exp]	6.6	0.8815
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10037812 [exp]	6.9	0.8946
AT4G32050			neurochondrin family protein (...		Lus10023067 [exp]	8.1	0.8726
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	8.7	0.9055
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	10.2	0.8904
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10018019 [exp]	11.2	0.8734

Compare expression of checked genes

Lus10019962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.