Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30550 264 / 6e-89 GGP3 gamma-glutamyl peptidase 3, Class I glutamine amidotransferase-like superfamily protein (.1) AT2G23970 262 / 3e-88 Class I glutamine amidotransferase-like superfamily protein (.1) AT4G30540 246 / 9e-82 Class I glutamine amidotransferase-like superfamily protein (.1) AT4G30530 242 / 2e-80 GGP1 gamma-glutamyl peptidase 1, Class I glutamine amidotransferase-like superfamily protein (.1) AT2G23960 233 / 8e-77 Class I glutamine amidotransferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014635 [exp] 225 / 1e-73 AT2G23970 233 / 8e-77 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10033793 [exp] 219 / 3e-71 AT2G23970 239 / 4e-79 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10015493 [exp] 192 / 3e-62 AT4G30550 96 / 8e-25 gamma-glutamyl peptidase 3, Class I glutamine amidotransferase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G102000 [exp] 375 / 9e-133 AT2G23970 308 / 1e-106 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.009G078200 [exp] 239 / 3e-79 AT2G23970 211 / 1e-68 Class I glutamine amidotransferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF00117 [flax] [poplar] GATase Glutamine amidotransferase class-I
Representative CDS sequence Show only first row Show all	>Lus10019964 pacid=23156151 polypeptide=Lus10019964 locus=Lus10019964.g ID=Lus10019964.BGIv1.0 annot-version=v1.0 ATGAAAGAATCATCAGGAAATTTAGAAGGAGAGAAGAAGGTGTATGGTGTTCTGATGGCAGCAAGAGACTCAGAGTATGTGAAGAAAGTGTATGGAGGAT ACTTCAATGTGTTCATTGCTGCCTTTGGTGGAGGAGAAGGAGAAATATGGGATTTGTTCAGAGTTGTGGATGGTGAGTTCCCTCTCATGGAAGATCTTCA CAAGTATGATGGGTTTGTGATTAGTGGAAGCCCTTATGATGCCTATGGAAATGACTTGTGGATCCTCAACCTCATTCTTCTTATACAAACTCTTCACTCC ATGAAGAAGAAACTCCTTGGTATTTGCTTTGGCCATCAGGTTTTGTGTAGGGCATTGGGTGGGAAAGTAGGGAAATCAATGAAAGGATGGGATATTGGGT TAAGAAGGGTGAGGATTGTGAAGGATTTGACACCATGGAGTTTCTTAGAAGATGTGAAGCAAATGCCACCATCTTTATCAATCATTGAGTGCCACCAAGA TGAAGTGTGGGAGGTTCCATCTGGAGCAGAGGTGATTGCATTCTCAGACAAAACTGGTGTGGAGATGTTCACCATTGGAGATCACATCCTGGGGATTCAA GGCCATCCTGAATACACTAACGACATTCTTTGTAGCCTAATCGATCGCCTTCTTCAAGGCAACTGCATCGAGACAGAAGTTGCGGAAAGTGTCAAATTTG AGTTGGAGATAGCCGAACCGGACAGAACTTATTGGGAGAAGATTTGCAAGAACTTTCTTAATGGAAGATGTACTAAATTAAATTGA
AA sequence Show only first row Show all	>Lus10019964 pacid=23156151 polypeptide=Lus10019964 locus=Lus10019964.g ID=Lus10019964.BGIv1.0 annot-version=v1.0 MKESSGNLEGEKKVYGVLMAARDSEYVKKVYGGYFNVFIAAFGGGEGEIWDLFRVVDGEFPLMEDLHKYDGFVISGSPYDAYGNDLWILNLILLIQTLHS MKKKLLGICFGHQVLCRALGGKVGKSMKGWDIGLRRVRIVKDLTPWSFLEDVKQMPPSLSIIECHQDEVWEVPSGAEVIAFSDKTGVEMFTIGDHILGIQ GHPEYTNDILCSLIDRLLQGNCIETEVAESVKFELEIAEPDRTYWEKICKNFLNGRCTKLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23970			Class I glutamine amidotransfe...		Lus10019964 [exp]	0	1
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10006084 [exp]	1.7	0.9659
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10020264 [exp]	2.2	0.9730
AT2G39440			unknown protein		Lus10018300 [exp]	3.2	0.9646
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10000180 [exp]	4.2	0.9667
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10028432 [exp]	5.7	0.9601
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10023624 [exp]	5.8	0.9495
AT5G35732			unknown protein		Lus10001730 [exp]	5.9	0.9279
					Lus10035048 [exp]	6.3	0.9651
					Lus10034389 [exp]	6.3	0.9459
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10002629 [exp]	7.5	0.9603

Compare expression of checked genes

Lus10019964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.