Plant FIBer expression Database

Lus10019965 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G23810 311 / 4e-107 TET8 tetraspanin8 (.1)
AT4G28050 296 / 3e-101 TET7 tetraspanin7 (.1)
AT4G30430 270 / 1e-90 TET9 tetraspanin9 (.1)
AT3G45600 216 / 3e-69 TET3 tetraspanin3 (.1)
AT3G12090 199 / 9e-63 TET6 tetraspanin6 (.1)
AT5G60220 184 / 1e-56 TET4 tetraspanin4 (.1)
AT2G19580 181 / 6e-56 TET2 tetraspanin2 (.1)
AT1G18520 178 / 5e-55 TET11 tetraspanin11 (.1)
AT5G46700 177 / 2e-54 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
AT4G23410 177 / 3e-54 TET5 tetraspanin5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015494
[exp]
443 / 3e-159 AT2G23810 370 / 2e-130 tetraspanin8 (.1)
Lus10008891
[exp]
404 / 7e-144 AT2G23810 377 / 5e-133 tetraspanin8 (.1)
Lus10023216
[exp]
404 / 8e-144 AT2G23810 376 / 1e-132 tetraspanin8 (.1)
Lus10038473
[exp]
239 / 1e-78 AT3G45600 446 / 9e-160 tetraspanin3 (.1)
Lus10008563
[exp]
215 / 3e-69 AT2G19580 411 / 1e-146 tetraspanin2 (.1)
Lus10017336
[exp]
202 / 4e-64 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
Lus10001668
[exp]
200 / 2e-63 AT5G46700 384 / 8e-136 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
Lus10023338
[exp]
182 / 8e-57 AT3G45600 347 / 1e-121 tetraspanin3 (.1)
Lus10007998
[exp]
171 / 3e-52 AT2G19580 369 / 6e-130 tetraspanin2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G177900
[exp]
355 / 3e-124 AT2G23810 317 / 4e-109 tetraspanin8 (.1)
Potri.018G099800
[exp]
355 / 3e-124 AT2G23810 322 / 3e-111 tetraspanin8 (.1)
Potri.009G015100
[exp]
241 / 1e-79 AT3G45600 388 / 7e-137 tetraspanin3 (.1)
Potri.003G093000
[exp]
209 / 3e-67 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
Potri.006G150400
[exp]
207 / 2e-66 AT2G19580 367 / 5e-129 tetraspanin2 (.1)
Potri.010G220300
[exp]
207 / 4e-66 AT3G12090 399 / 2e-141 tetraspanin6 (.1)
Potri.008G041600
[exp]
206 / 1e-65 AT3G12090 397 / 2e-140 tetraspanin6 (.1)
Potri.015G055700
[exp]
202 / 2e-64 AT1G18520 196 / 6e-62 tetraspanin11 (.1)
Potri.001G141400
[exp]
191 / 6e-60 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
Potri.001G107200
[exp]
175 / 6e-54 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0347 Tetraspannin PF00335 Tetraspanin Tetraspanin family
Representative CDS sequence
>Lus10019965 pacid=23156200 polypeptide=Lus10019965 locus=Lus10019965.g ID=Lus10019965.BGIv1.0 annot-version=v1.0
ATGTTCCGCCTAAGCAACAACCTCGTCGGGATCCTCAACTTCATCACCTTCCTCCTCTCCATCCCCATAATCTGGGCCGGCGCGTGGCTCCGCAACCATG
GAAGCTCCGAGTGCGACCGTTTCCTCGACACACCTATCATCGTCATCGGAGTCTTCCTCATGCTCGTCTCCTTGGCCGGACTCGTCGGAGCTTGCTGCAA
GAACTCCTGCTTGCTTTGGATCTACCTCGTAGTCATGTTCCTCCTCATCGTCCTCCTCTTCTGTTTCACCATCTTCGCCTTCGTTGTCACCAACAAAGGA
GCCGGCCAAGCGCTGTCCAACCGTGGCTATAAGGAGTATAGATTGGGAGGATACTCCGATTGGTTGCAGAAGAGAGTCACTAGCACCAAGAACTGGAATA
AGATCCGGAGTTGTTTGATTGACGCTAAAGTTTGCTCCAAGTTCAACGAGACTTATCTCTCTGATTCCGTCGAGAAGTTCTACACCGAGCGATTGTCTTC
TCTTCAGTCCGGATGCTGCAAGCCAGCAGACGAATGTGGATTCACCTACGTGAACCCAACAACATGGACCGGGACTAGCACGAATTCGACCAACTCAGAC
TGTAACGCTTGGGAAAACCAGGCAGATGTTCTTTGCTTCAACTGCAACTCCTGTAAGGCTGGTCTGCTTGACAACATCAAACGTGACTGGAAGCGTGTAG
CGATCGTGAACATCGTCTTCCTGGTGTTCCTCATCATTGTCTACTCAGTTGGTTGCTGTGCTTTCAGGAACAACAGGAGGGACAACTCTTACTCTTCGGG
ATTCAAGGCGTAG
AA sequence
>Lus10019965 pacid=23156200 polypeptide=Lus10019965 locus=Lus10019965.g ID=Lus10019965.BGIv1.0 annot-version=v1.0
MFRLSNNLVGILNFITFLLSIPIIWAGAWLRNHGSSECDRFLDTPIIVIGVFLMLVSLAGLVGACCKNSCLLWIYLVVMFLLIVLLFCFTIFAFVVTNKG
AGQALSNRGYKEYRLGGYSDWLQKRVTSTKNWNKIRSCLIDAKVCSKFNETYLSDSVEKFYTERLSSLQSGCCKPADECGFTYVNPTTWTGTSTNSTNSD
CNAWENQADVLCFNCNSCKAGLLDNIKRDWKRVAIVNIVFLVFLIIVYSVGCCAFRNNRRDNSYSSGFKA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G23810 TET8 tetraspanin8 (.1) Lus10019965
[exp]
0 1
AT2G23810 TET8 tetraspanin8 (.1) Lus10015494
[exp]
1.0 0.9901
Lus10043392
[exp]
2.0 0.9640
AT4G17230 GRAS SCL13 SCARECROW-like 13 (.1) Lus10017554
[exp]
2.0 0.9674
AT1G80840 WRKY ATWRKY40, WRKY4... WRKY DNA-binding protein 40 (.... Lus10041660
[exp]
2.4 0.9659
AT1G18210 Calcium-binding EF-hand family... Lus10018012
[exp]
4.0 0.9415
AT4G17230 GRAS SCL13 SCARECROW-like 13 (.1) Lus10000539
[exp]
4.6 0.9443
AT1G80840 WRKY ATWRKY40, WRKY4... WRKY DNA-binding protein 40 (.... Lus10024074
[exp]
4.9 0.9545
AT5G48150 GRAS PAT1 phytochrome a signal transduct... Lus10035840
[exp]
5.5 0.9602
AT4G32030 unknown protein Lus10001935
[exp]
6.2 0.9235
AT4G28400 Protein phosphatase 2C family ... Lus10040565
[exp]
6.7 0.9409

Lus10019965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.