Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67170 125 / 2e-33 unknown protein AT5G61920 113 / 5e-30 unknown protein AT3G14750 78 / 2e-16 unknown protein AT1G55170 74 / 3e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015495 [exp] 480 / 3e-173 AT1G67170 139 / 1e-38 unknown protein Lus10035371 [exp] 123 / 1e-33 AT1G67170 284 / 2e-95 unknown protein Lus10030976 [exp] 122 / 5e-32 AT1G67170 294 / 1e-96 unknown protein Lus10013698 [exp] 92 / 3e-21 AT3G14750 298 / 3e-100 unknown protein Lus10005563 [exp] 88 / 6e-20 AT3G14750 288 / 2e-96 unknown protein Lus10038143 [exp] 86 / 3e-19 AT3G14750 275 / 1e-91 unknown protein Lus10015628 [exp] 74 / 3e-15 AT1G55170 211 / 3e-68 unknown protein Lus10037647 [exp] 74 / 5e-15 AT1G55170 233 / 6e-76 unknown protein Lus10015629 [exp] 73 / 8e-15 AT1G55170 236 / 2e-77 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G178100 [exp] 233 / 7e-76 AT5G61920 155 / 3e-46 unknown protein Potri.017G109700 [exp] 129 / 3e-34 AT1G67170 282 / 3e-91 unknown protein Potri.003G037900 [exp] 88 / 2e-20 AT1G55170 259 / 2e-86 unknown protein Potri.001G382700 [exp] 76 / 1e-15 AT3G14750 297 / 6e-100 unknown protein Potri.009G076700 [exp] 71 / 5e-14 AT3G14750 173 / 8e-52 unknown protein Potri.001G281400 [exp] 68 / 4e-13 AT2G30120 161 / 4e-48 unknown protein Potri.018G100100 [exp] 59 / 1e-10 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019966 pacid=23156136 polypeptide=Lus10019966 locus=Lus10019966.g ID=Lus10019966.BGIv1.0 annot-version=v1.0 ATGGCTGGAGGCGGGCGTCGTCCTCATACATTAGAAGGACGTTCTGTTCAAACTGCGGGAGTTTTAGGACCATTACCGAGTGGTATACGGGTGTTGGATC CTACCTCTCATCATCCAGATCGTCTTGAGGACAAAGTTGCTGCTCAGGCTGCCGAAATCGACAAACTGGCTAAAGATAATCGGCTATTGGTTGCGGGTAA TGCAGCATTAAGGGAGGATCTGATTGCTGTTCAGAAAGAGGCACAGCAACTCAAAGCGCACATTAGGAGTATTCAAACAGAGAGTGATATCCAGATTAGG GTTTTGCTGGAGAAGATTGCGAAAAGGGATGCAGCAGACATTAGGGCTGCTGAGAATGTGAAGGAAGATCTTAAGCAGGCGCTTACAGAGGCACGGAACT TGGTCAAGGATAGACCTGAGTTAATTGATAAAATTCGGCAGGCCTCCCGTGAATTGCAAATAGTCCGTACGGAGGTTAAGGGTTTACCCGATTTGCAAGC TGAGCTTGATGATTTGAGGCAGGAATACAATAGACTAAGGGATTCTTTCAAGTATGAGAAAGGGTTCAACATAGCTAAAGTAGAGGAGCTACAGTCGACG GAGAAGAACCTTATTGAGATGGCAAGACAAGTGGATACCATATATGCCGAAATCTTGAACACCGAGAAGCGAGCCAATGCAGCAGTTGCTTACTCTCAGC CTCTACAAGTAGCTGGTGGTTCCTATGTCGATCCACATGGAAGATCTCTTGTTCATCAAAGTAGTGCTGCAGCTGGCGATGGGATGATGTCGAATGGGAA TTGTAGTGATCAGTCGCTTGGCAAGAAATGA
AA sequence Show only first row Show all	>Lus10019966 pacid=23156136 polypeptide=Lus10019966 locus=Lus10019966.g ID=Lus10019966.BGIv1.0 annot-version=v1.0 MAGGGRRPHTLEGRSVQTAGVLGPLPSGIRVLDPTSHHPDRLEDKVAAQAAEIDKLAKDNRLLVAGNAALREDLIAVQKEAQQLKAHIRSIQTESDIQIR VLLEKIAKRDAADIRAAENVKEDLKQALTEARNLVKDRPELIDKIRQASRELQIVRTEVKGLPDLQAELDDLRQEYNRLRDSFKYEKGFNIAKVEELQST EKNLIEMARQVDTIYAEILNTEKRANAAVAYSQPLQVAGGSYVDPHGRSLVHQSSAAAGDGMMSNGNCSDQSLGKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67170			unknown protein		Lus10019966 [exp]	0	1
AT1G67170			unknown protein		Lus10015495 [exp]	1.0	0.9265
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10022566 [exp]	1.4	0.9177
AT3G55920			Cyclophilin-like peptidyl-prol...		Lus10030408 [exp]	3.0	0.8983
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10039887 [exp]	4.2	0.8783
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10003092 [exp]	5.7	0.8723
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10037999 [exp]	6.9	0.8575
AT3G18430			Calcium-binding EF-hand family...		Lus10010775 [exp]	7.1	0.8698
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042861 [exp]	8.1	0.8166
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10031575 [exp]	9.2	0.8427
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10004374 [exp]	9.2	0.8916

Compare expression of checked genes

Lus10019966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.