Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30440 685 / 0 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT4G00110 517 / 0 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT1G02000 509 / 0 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT2G45310 491 / 1e-173 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT4G12250 466 / 1e-163 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT3G23820 464 / 1e-162 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT1G30620 89 / 2e-19 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23920 89 / 2e-19 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT3G14790 86 / 4e-18 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT4G10960 84 / 1e-17 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015496 [exp] 763 / 0 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10008893 [exp] 707 / 0 AT4G30440 767 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10015876 [exp] 516 / 0 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10000787 [exp] 512 / 0 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10030281 [exp] 508 / 6e-180 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10009288 [exp] 505 / 4e-179 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10016640 [exp] 453 / 5e-158 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10022552 [exp] 448 / 3e-156 AT3G23820 742 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10032391 [exp] 442 / 2e-154 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G100400 [exp] 680 / 0 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.006G178500 [exp] 660 / 0 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.014G068400 [exp] 520 / 0 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G146500 [exp] 515 / 0 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.001G320000 [exp] 481 / 2e-169 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.017G059100 [exp] 477 / 1e-167 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.003G114600 [exp] 454 / 4e-159 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.012G128200 [exp] 442 / 6e-155 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G116750 [exp] 97 / 4e-24 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.011G156100 [exp] 94 / 6e-21 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10019967 pacid=23156150 polypeptide=Lus10019967 locus=Lus10019967.g ID=Lus10019967.BGIv1.0 annot-version=v1.0 ATGCCATCGTTAGAGGAGGAGCTTTTCCCATCTACTCCGGGAAAATTCAAGATCGACCACCACCGTAGCCACCGCCAATTCCATCGATGCTTCTCCTCCA CCAGCACGATGTTCCTCTGGGCTCTGTTCCTCATCGCCCTAACAGCATCCTATCTTAGCTTCCAGAGCTTCGTCGATTCGGGAAGCCGCTACTTCTCCGC CTCCTGGGGCGGAATCCAGTGGGAGAAGGAGGTTCGTAACTCCGCCCGGATCCACCGGTCCGGCGGGATGTCGGTGCTCGTCACCGGCGCCGCCGGATTC GTCGGCACTCACGTCTCCTTAGCGTTGAAAAAGAGAGGAGACGGCGTGGTAGGGATTGACAATTTTAACAATTACTACGACCCGTCTTTGAAAAAAGCCC GTAAATCGATGGTGGAAGCCCAAGGAATTTTCATTGTCACCGGAGATATAAACGACGCCAAGCTGCTGAAAAAGATGTTCGACGTCGTTCCGTTCACCCA CGTGATGCACCTGGCAGCGCAGGCCGGTGTTCGTTACGCGATGGAGAATCCTCATTCTTATGTGCATTCCAACATCGCCGGATTGGTAACGCTCCTCGAG ATCTGCAAATCAGCCGATCCCCAGCCTGCTATCGTATGGGCATCGTCCAGCTCCGTTTACGGGCTCAACGAGAAGGTACCCTTTTCGGAATCGGACCGGA CCGATCAGCCGGCGAGTCTGTACGCTGCGACCAAGAAGGCCGGTGAGGAAATTACTCATACTTATAATCACATTTACGGGCTGTCGATTACGGGGTTAAG ATTCTTCACGGTTTACGGGCCGTGGGGTCGACCGGACATGGCGTACTTCTCGTTTACGAGGAATATTTTGCAAGGGAAGCCGATTACGGTTTACCGGGGG AAGAACCGGGTCGATTTGGCCCGGGATTTCACCTACATTGACGATATTGTGAAGGGGTGTTTGGGTTCGTTGGATACTTCAGGGAAGAGTACCGGTTCCG GCGGGAAGAAGACTGGTCCGGCGAAGTATCGGATTTTCAATTTGGGGAATACGTCGCCGGTGACGGTGCCGAATTTGGTGGGGATATTGGAGAGGCATTT GAAGGTGAAGGCGAAGAAGAAGCTTGTGGATATGCCTGGAAATGGCGGCGTTTCCTTTAACTCAGCCCATACCAGTCAATACTAG
AA sequence Show only first row Show all	>Lus10019967 pacid=23156150 polypeptide=Lus10019967 locus=Lus10019967.g ID=Lus10019967.BGIv1.0 annot-version=v1.0 MPSLEEELFPSTPGKFKIDHHRSHRQFHRCFSSTSTMFLWALFLIALTASYLSFQSFVDSGSRYFSASWGGIQWEKEVRNSARIHRSGGMSVLVTGAAGF VGTHVSLALKKRGDGVVGIDNFNNYYDPSLKKARKSMVEAQGIFIVTGDINDAKLLKKMFDVVPFTHVMHLAAQAGVRYAMENPHSYVHSNIAGLVTLLE ICKSADPQPAIVWASSSSVYGLNEKVPFSESDRTDQPASLYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRG KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGGKKTGPAKYRIFNLGNTSPVTVPNLVGILERHLKVKAKKKLVDMPGNGGVSFNSAHTSQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10019967 [exp]	0	1
					Lus10017792 [exp]	5.7	0.8498
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10012458 [exp]	9.9	0.8384
AT3G02720			Class I glutamine amidotransfe...		Lus10010964 [exp]	12.0	0.8138
AT2G36320			A20/AN1-like zinc finger famil...		Lus10020594 [exp]	12.4	0.8087
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Lus10024871 [exp]	14.8	0.7787
AT1G03350			BSD domain-containing protein ...		Lus10029636 [exp]	16.1	0.8277
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Lus10001835 [exp]	17.5	0.7915
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10015264 [exp]	18.7	0.8104
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	22.5	0.8075
AT5G17190			unknown protein		Lus10005110 [exp]	22.8	0.8177

Compare expression of checked genes

Lus10019967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.