Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23820 311 / 1e-107 Metal-dependent phosphohydrolase (.1.2) AT1G26160 278 / 2e-94 Metal-dependent phosphohydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015497 [exp] 379 / 1e-134 AT2G23820 331 / 2e-115 Metal-dependent phosphohydrolase (.1.2) Lus10017897 [exp] 275 / 3e-93 AT1G26160 329 / 2e-114 Metal-dependent phosphohydrolase (.1) Lus10035072 [exp] 260 / 7e-87 AT1G26160 319 / 5e-110 Metal-dependent phosphohydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G178600 [exp] 325 / 2e-113 AT2G23820 305 / 2e-105 Metal-dependent phosphohydrolase (.1.2) Potri.008G111700 [exp] 280 / 3e-95 AT1G26160 352 / 9e-124 Metal-dependent phosphohydrolase (.1) Potri.010G133001 [exp] 71 / 7e-16 AT1G26160 84 / 2e-21 Metal-dependent phosphohydrolase (.1) Potri.010G133101 [exp] 63 / 4e-13 AT1G26160 82 / 8e-21 Metal-dependent phosphohydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0237 [flax] [poplar] HD_PDEase PF01966 [flax] [poplar] HD HD domain
Representative CDS sequence Show only first row Show all	>Lus10019968 pacid=23156182 polypeptide=Lus10019968 locus=Lus10019968.g ID=Lus10019968.BGIv1.0 annot-version=v1.0 ATGAGGATCATAGCAACTCGAGCGGCAGTGCTCTGTAAATCGAGCTCACTCCTCTTCCTCACCTCATCCTCTTCCTCCTCCTTCTCTGCTCCCACGGCCC GCTTCCGGTTCAACTCGTTCCCCGCTTCATCTTCCTCATCTCACTCCAGTCACCACCGCATGGCAGCCGCCGAGTCTTCTCCATCCGACGCCGCCAACGC CGCCGCATCCCCTTCGTCCGCCATTGATTTCCTCTCACTCTGCCACCGCCTCAAGACCACGAAGAGGGCTGGATGGGTGAAGAGGGATGTTAGGGATCCG GAATCGATAGCGGATCATATGTACAGAATGGGATTGATGGGTTTGATTTTGCCGGATATTCCTGGCATCGATCGTGACAAGTGTGTGAAGATGGCAATTG TTCATGACATAGCTGAAGCTATAGTTGGTGACATTACCCCATCAGATGGAGTTCCCAAGGAGGAGAAGAGCAGAAAAGAGGCAGAAGCATTGGATCATAT GTGCAAGTTGTTAGGTGGAGGATCAAGAGCTAAAGAGATAGAGCAGTTGTGGAAAGAGTATGAGGATAATTCTTCTCCAGAAGCCAAATTAGTAAAGGAC TTTGACAAGGTGGAGATGATTCTTCAGGCTCTAGAATATGAAAATGAACAAGGGAAAGATTTGGAGGAGTTCTTCCAGTCCACTGCTGGGAAATTCCAGA CAGATGTAGGCAAAGCTTGGGCCAAGGAAGTAGCATCCAGAAGGAAAGCCAACTAG
AA sequence Show only first row Show all	>Lus10019968 pacid=23156182 polypeptide=Lus10019968 locus=Lus10019968.g ID=Lus10019968.BGIv1.0 annot-version=v1.0 MRIIATRAAVLCKSSSLLFLTSSSSSSFSAPTARFRFNSFPASSSSSHSSHHRMAAAESSPSDAANAAASPSSAIDFLSLCHRLKTTKRAGWVKRDVRDP ESIADHMYRMGLMGLILPDIPGIDRDKCVKMAIVHDIAEAIVGDITPSDGVPKEEKSRKEAEALDHMCKLLGGGSRAKEIEQLWKEYEDNSSPEAKLVKD FDKVEMILQALEYENEQGKDLEEFFQSTAGKFQTDVGKAWAKEVASRRKAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23820			Metal-dependent phosphohydrola...		Lus10019968 [exp]	0	1
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10031517 [exp]	1.7	0.9141
AT3G46630			Protein of unknown function (D...		Lus10018738 [exp]	2.4	0.8951
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Lus10013424 [exp]	9.2	0.8806
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10002422 [exp]	14.0	0.8391
AT5G58070		ATTIL	temperature-induced lipocalin ...		Lus10019048 [exp]	15.4	0.8375
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Lus10010557 [exp]	16.4	0.8629
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10010003 [exp]	16.5	0.8161
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Lus10012892 [exp]	18.7	0.8592
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10035751 [exp]	18.7	0.8397
AT2G43630			unknown protein		Lus10005311 [exp]	20.3	0.8372

Compare expression of checked genes

Lus10019968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.