Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28040 294 / 8e-98 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) AT4G30420 277 / 5e-91 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 177 / 2e-52 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 177 / 3e-52 WAT1 Walls Are Thin 1 (.1.2) AT5G07050 170 / 2e-49 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 169 / 2e-49 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 169 / 4e-49 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 168 / 5e-49 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G09380 168 / 6e-49 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 162 / 1e-46 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019970 [exp] 479 / 6e-171 AT4G30420 351 / 5e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023211 [exp] 291 / 5e-97 AT4G30420 378 / 1e-130 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10015498 [exp] 203 / 6e-65 AT4G28040 141 / 5e-41 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) Lus10038959 [exp] 184 / 5e-55 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10027251 [exp] 180 / 5e-53 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10020987 [exp] 179 / 2e-52 AT1G25270 301 / 8e-100 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 177 / 3e-52 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 175 / 4e-51 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 174 / 7e-51 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G177700 [exp] 355 / 1e-121 AT4G30420 353 / 1e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177600 [exp] 323 / 3e-109 AT4G30420 375 / 4e-129 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.018G099500 [exp] 317 / 6e-107 AT4G30420 402 / 7e-140 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177800 [exp] 263 / 9e-86 AT4G30420 320 / 2e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 184 / 5e-55 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.015G042900 [exp] 183 / 1e-54 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.010G209200 [exp] 182 / 4e-54 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 179 / 3e-53 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G108600 [exp] 178 / 1e-52 AT1G25270 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 177 / 1e-52 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10019969 pacid=23156133 polypeptide=Lus10019969 locus=Lus10019969.g ID=Lus10019969.BGIv1.0 annot-version=v1.0 ATGAGTTCTTACAAGCCAGAGATGATCATGATAGCGTTGGAGTTTAGTTATGCTGGGCTTGCACTCTTCACAAAGGGAGCTTTTATGGGTGGGATGAGTC CCAATGTCTTTGTTGTTTATAGACAAGCCATAGCAACTCTGATCATGATTCCTCTGGCTTTCATCTCCAACAGCAAGAATCCAACTGGAGTTTCATTGAC ATTGAAGAGCTTCTCTTGGATATTTGCAGCCTCTCTCTTTGGGGTGACAGCCAATCAGAATACATATTTCCAAGGCATGAACTTGGCTTCTACCACTGCT GCAAATGCAATTATTAATCTCATTCCAGCAGTCACATTTGTGCTTGCTGCAATTTTTGGTATGGAGAAAGTTGACAATAGAAGCCTGAGGAGTGGTGCAA AAATTGTGGGAACTGTAATCTGTGTAGTTGGAGCCATGGCCATAGCTTTTCTGAAAGGCTCTAAGCTTCTAAACTCTCAGCTTTTGGGGTCTGAATCTGA TGATAACAATTGGCTACTGGGTTGTCTTCTTCTGCTTGCAAGCAGCTTCTTATGGTCCTTGTGGATAATCCTGCAGGTTCCAATTACTGCAACATGTCCT GATATCATATATTCATCAGCTTGGTGTTGCTTACTAGCCACATTACAATCAATAATGGTAGCTTTGTTCTTAGAGAAGGATTTTTCAGCTTGGAAACTCA ATTCCATCTTTGAACTTGGTTGCTGCCTCTACAGTGGAGTAATCTTGGTTCTGACCGTCTTGGGCCAGACCTGGTGTGTTGGTGAGAGAGGCCCAGTATT CCCTGCAATTTTCGACCCACTTTGCACAGTCATTACTACAATCTCGGCTTCCATTTTTCTTCACGAAAAAACTTACATGGGAGGGCTGATCGGAGCTGCG ATGGTGATAACGGGTTTGTACCTAGTATTGTGGGGGAAAGCCAATGATTACATGAAGGAGAACCAAAGTGAAAAAGATAAGAAACCTGCAACTGATTTGG AAGAACCTTTTCTTTCTAATAAACCAGCTCAAGTGTAA
AA sequence Show only first row Show all	>Lus10019969 pacid=23156133 polypeptide=Lus10019969 locus=Lus10019969.g ID=Lus10019969.BGIv1.0 annot-version=v1.0 MSSYKPEMIMIALEFSYAGLALFTKGAFMGGMSPNVFVVYRQAIATLIMIPLAFISNSKNPTGVSLTLKSFSWIFAASLFGVTANQNTYFQGMNLASTTA ANAIINLIPAVTFVLAAIFGMEKVDNRSLRSGAKIVGTVICVVGAMAIAFLKGSKLLNSQLLGSESDDNNWLLGCLLLLASSFLWSLWIILQVPITATCP DIIYSSAWCCLLATLQSIMVALFLEKDFSAWKLNSIFELGCCLYSGVILVLTVLGQTWCVGERGPVFPAIFDPLCTVITTISASIFLHEKTYMGGLIGAA MVITGLYLVLWGKANDYMKENQSEKDKKPATDLEEPFLSNKPAQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28040			nodulin MtN21 /EamA-like trans...		Lus10019969 [exp]	0	1
AT5G49800			Polyketide cyclase/dehydrase a...		Lus10042398 [exp]	1.7	0.8774
AT5G14210			Leucine-rich repeat protein ki...		Lus10032058 [exp]	2.8	0.8664
AT5G53200	MYB	TRY	TRIPTYCHON, Homeodomain-like s...		Lus10038822 [exp]	3.0	0.8216
AT3G11920			glutaredoxin-related (.1)		Lus10034196 [exp]	3.3	0.8123
AT5G35670		IQD33	IQ-domain 33 (.1)		Lus10000919 [exp]	4.9	0.8357
AT5G14210			Leucine-rich repeat protein ki...		Lus10032059 [exp]	5.5	0.8474
AT5G58160			actin binding (.1)		Lus10007447 [exp]	7.5	0.8327
AT3G61660			unknown protein		Lus10032366 [exp]	7.9	0.7687
AT3G22104			Phototropic-responsive NPH3 fa...		Lus10018499 [exp]	11.0	0.7977
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Lus10041729 [exp]	14.4	0.8486

Compare expression of checked genes

Lus10019969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.