Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28040 305 / 3e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) AT4G30420 305 / 7e-102 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G09380 182 / 4e-54 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 180 / 2e-53 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 176 / 6e-52 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 176 / 8e-52 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 174 / 6e-51 WAT1 Walls Are Thin 1 (.1.2) AT5G07050 174 / 7e-51 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 172 / 3e-50 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G64700 171 / 5e-50 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019969 [exp] 468 / 2e-166 AT4G28040 334 / 8e-114 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) Lus10023211 [exp] 283 / 8e-94 AT4G30420 378 / 1e-130 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10015498 [exp] 208 / 1e-66 AT4G28040 141 / 5e-41 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) Lus10040310 [exp] 189 / 1e-56 AT2G39510 430 / 1e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10018889 [exp] 187 / 2e-56 AT1G43650 372 / 1e-128 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10028585 [exp] 184 / 4e-55 AT1G43650 364 / 1e-125 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10023431 [exp] 184 / 6e-55 AT2G39510 425 / 8e-149 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 180 / 2e-53 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 179 / 7e-53 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G177700 [exp] 362 / 3e-124 AT4G30420 353 / 1e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.018G099500 [exp] 317 / 1e-106 AT4G30420 402 / 7e-140 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177600 [exp] 316 / 2e-106 AT4G30420 375 / 4e-129 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177800 [exp] 282 / 5e-93 AT4G30420 320 / 2e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 188 / 2e-56 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G029100 [exp] 188 / 3e-56 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.005G233600 [exp] 186 / 9e-56 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.010G209200 [exp] 185 / 3e-55 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G108600 [exp] 182 / 4e-54 AT1G25270 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 181 / 6e-54 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10019970 pacid=23156120 polypeptide=Lus10019970 locus=Lus10019970.g ID=Lus10019970.BGIv1.0 annot-version=v1.0 ATGGGTTCTTCTTCCAAGCCAGGAATGGTTATGGTTGCCTTGCAAATTAGTTATGCTGGGCTTGCTCTCTTTACAAAGGCAGCTTTTATTGGTGGCTTGA GTCCCAAAATCTTCGTTGTTTACAGACAAGCCGTAGCTACTTTGTTCATGGCTCCTCTAGCTTTCATCTCACGCAGGAAGAACCCAAGTACTAGGGTCTC ATTGACACTGGAGAGCTTCTCATGGATATTCGCTGCCTCTCTCTTTGGGGTGACAGGGAATCAGAATGCATATTTCCAAGGCATAAACTTAGCATCTTCC ACTGCTGCAACTGCAATTATAAATCTCATTCCAGCAGTCACTTTCATACTAGCAGTCATTTTCCGGATGGAGAAAATCAACATTAGAAGCCTGAGGAGTG GTGCCAAGATTGTAGGGACTGTCGTCTGTGTAGTTGGAGCCATGGCAGTGGCTTTCCTAAAGGGACCAAAGCTCTTAAATTACGGTTTCATCCTTGGCTC GGAAGAAGATGACAGAAATTGGGTCATGGGTTGTCTCCTCCTGTTTGCGAGCAGCTTCTTCTGGTCCTTGTGGATAATTCTTCAGGTTCCAATAGCGGCA ACATGCCCTGATCTGATATACTCATCAGCATGGTTGTGCTTCCTGGCTACCATACAATCAATGACAGTAGCTTTGTTCCTGGAGAAGGATTACTCGGCTT GGAAACTCGATTCCGTCTTTGAATTCGGTTGTTGTTTGTATGGGGGAGTAGCTTTGGCACTGTCTTTCTTGGGCCAAGCTTGGTGTGTTGGTGAGAGAGG CCCAGTGTTCCCTGCAATTTTCAACCCTCTTTGCGCGGTCATTACTGCAATCTTTGCTGCAATTTTCCTCCACGAACAAACTTACTTGGGAGGGTTGATC GGAGGTCTAGCGGTGATAATAGGGCTCTATATGGTGCTCTGGGGGAAAGCAAAGGATTTGGAGGAACAGACTAAAATCGACAAGGAGAAAATGGCTACAG CAGATCTGGAACAACCTTTTCTTCCTGATCATAAACCAACAGAAGTGTAA
AA sequence Show only first row Show all	>Lus10019970 pacid=23156120 polypeptide=Lus10019970 locus=Lus10019970.g ID=Lus10019970.BGIv1.0 annot-version=v1.0 MGSSSKPGMVMVALQISYAGLALFTKAAFIGGLSPKIFVVYRQAVATLFMAPLAFISRRKNPSTRVSLTLESFSWIFAASLFGVTGNQNAYFQGINLASS TAATAIINLIPAVTFILAVIFRMEKINIRSLRSGAKIVGTVVCVVGAMAVAFLKGPKLLNYGFILGSEEDDRNWVMGCLLLFASSFFWSLWIILQVPIAA TCPDLIYSSAWLCFLATIQSMTVALFLEKDYSAWKLDSVFEFGCCLYGGVALALSFLGQAWCVGERGPVFPAIFNPLCAVITAIFAAIFLHEQTYLGGLI GGLAVIIGLYMVLWGKAKDLEEQTKIDKEKMATADLEQPFLPDHKPTEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30420			nodulin MtN21 /EamA-like trans...		Lus10019970 [exp]	0	1
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10028227 [exp]	2.4	0.9740
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Lus10014658 [exp]	4.0	0.9700
AT4G10265			Wound-responsive family protei...		Lus10018529 [exp]	4.9	0.9471
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10005697 [exp]	5.0	0.9591
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	6.5	0.9586
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011979 [exp]	8.7	0.9616
					Lus10018816 [exp]	8.8	0.9544
AT4G32480			Protein of unknown function (D...		Lus10015437 [exp]	10.6	0.9603
AT1G21400			Thiamin diphosphate-binding fo...		Lus10018945 [exp]	13.0	0.9396
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10012536 [exp]	14.4	0.9473

Compare expression of checked genes

Lus10019970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.