Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57800 830 / 0 CER3, FLP1, YRE, WAX2 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) AT1G02205 353 / 1e-113 CER1 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) AT2G37700 298 / 1e-92 Fatty acid hydroxylase superfamily (.1.2) AT1G02190 295 / 4e-91 Fatty acid hydroxylase superfamily (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015499 [exp] 1226 / 0 AT5G57800 877 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10023210 [exp] 1040 / 0 AT5G57800 882 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10008895 [exp] 1036 / 0 AT5G57800 885 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10019510 [exp] 286 / 6e-88 AT1G02205 763 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10011473 [exp] 117 / 7e-29 AT1G02205 310 / 7e-102 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10011472 [exp] 115 / 3e-28 AT1G02205 303 / 5e-99 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10023110 [exp] 90 / 7e-19 AT1G02205 261 / 6e-81 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10023109 [exp] 42 / 0.0002 AT1G02205 87 / 3e-21 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G099400 [exp] 942 / 0 AT5G57800 851 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Potri.006G177500 [exp] 928 / 0 AT5G57800 890 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Potri.014G152900 [exp] 322 / 1e-101 AT1G02205 789 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G152600 [exp] 316 / 2e-99 AT1G02205 788 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G152301 [exp] 315 / 4e-99 AT1G02205 790 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G180300 [exp] 301 / 1e-93 AT1G02205 793 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12076 [flax] [poplar] Wax2_C WAX2 C-terminal domain PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10019971 pacid=23156190 polypeptide=Lus10019971 locus=Lus10019971.g ID=Lus10019971.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTGCTTTGTCTGCCTGGCCATGGGAGAACCTTGGAGTGTACAAGTATTTGCTGTATGGACCTGTGCTGGGGAAAGTAGTCTACTCAAGAT ATCAAGATGGGTACTTGAAGCTAGATTGGTGTTTTTACTTGGTAGTCATTTGGTACCTCAGGATGTGTGTCCACATACTGTGGAGCACTTTTGTCAATAT GCTCTTCTTCACCAAAAGCCTCAGGATCAACAAACATGGCTATGATTTCAACCAGATTGATAAAGAATGGGATTGGGACAATTTCCTGATCCTGCAATCA ATGATTGCATCAGTGACATGTTTAATGTTTCCATCGTTGTTGGAACTTCCTGTATGGAACACAAAAGGAGTGGTCTGCATTTTGGTTCTACATGTATTAA TCTCAGAGCCACTTTACTACTGGGTTCATAGATGCTTCCACAAAACCTCCTTGTTCACCAATTACCATTCAATTCACCACTCATCTGCAGTTCTCCATCC TTACACAGGATCACATTTGTCATTTCTGGAGCATCTGGTGCAAGCCATAATCATTGGGATCCCAATATTTGGATCTGCAATTCTTGGATATGGATCATTG GTTCCAATGGTTGGCTACGTTTTGGTGTTTGATTTCCTGAGGTGTATGGTCCATTCCAACACTGAAGTTATTCCTCACCAGCTCTTCCAGACTCTCCCAT TCCTCAAATACCTCATTTCAACACCAACGTATAATAGCCTGCATCATGCTGAAATGGGAACCAATTTCTGCCTGTTTATGCCAATCTTTGATGCAATTTG GAAGACCCTTAACACCAATTCATGGGAGCTTCACAAGAAGCAGCGTGCAAAAGCAGGGAAGTATGGGAGAGTAGCTGACTTCGTGTTCTTGGCACACGTT GTCGATGTATCTTCTTCGATGCATTCGCCCTACGTCTTCCGGACAGTTTCTTCGTTGCCGTACAAGTTCCAAGCATTCTTGATCCCTTACTGGCCAACAA CTTTCATGGTGATGCTAATGATGTGGGCTAAAGCCAGGGTATTCATCCAATCCTTCTACACCCTCAGGGGCAAGCTTCATGAGACTTGGGTTGTCCCTAG GTTTGGTTTCCAGTACTTCTTGCCATTTGCCAAGGAAGGAATCAATAAAAGAATTGATGAGGCGATTATCAAAGCTGATAGACTTGGAGTTAAGGTCCTG AGTCTTGCTGCACTCAACAAGAATGAAGCTCTGAATGGAGGTGGAACATTGTTTGTAAACAAGCATCCTGATCTTCGAGTCCGAATCGTCCATGGCAACA CGTTGACTGCAGCAGTGATTCTTAATGAGATTGGAGATGACATTGAAGAAGTTTTCCTAACAGGAGCTACTTCCAAGCTTGGAAGAGCCATTGCTCTTTA CCTTTGTCGACGCAGAGTTCGAGTTCTCATGCTGACGCTATCTACCGAGAGATTTCAGAAGATTCAGAAAGAAGCACCAGTGGAATGCCAGAGTTACTTG GTGCAAGTTACCAAGTATCAGGCTGCTAGAAATTGCAAGACTTGGATAGTTGGGAAGTGGATCACACCAAGAGAGCAAAATTGGGCCCCTTCAGGAGCCC ACTTCCATCAGTTTGTTGTCCCGCCAATTTTCGCATTCAGGAAGGATTGCACCTATGGGGACCTTGCTGCAATGAGATTGCCTAATGATGTTGAAGGTCT TGGATGTTGTGAGTACACGATGGACCGCGGAGTGGTGCACGCATGCCACGCGGGAGGGGTGGTGCACTTCCTAGAAGGGTGGAAGCACCACGAAGTCGGA GCCATAGATGTCGACAGGATTGATCTTGTGTGGAATGCTGCAATGAAACATGGATTGAAGCCTGTCTCCAACATGAACAAATCGAAACAAACATAG
AA sequence Show only first row Show all	>Lus10019971 pacid=23156190 polypeptide=Lus10019971 locus=Lus10019971.g ID=Lus10019971.BGIv1.0 annot-version=v1.0 MAAAALSAWPWENLGVYKYLLYGPVLGKVVYSRYQDGYLKLDWCFYLVVIWYLRMCVHILWSTFVNMLFFTKSLRINKHGYDFNQIDKEWDWDNFLILQS MIASVTCLMFPSLLELPVWNTKGVVCILVLHVLISEPLYYWVHRCFHKTSLFTNYHSIHHSSAVLHPYTGSHLSFLEHLVQAIIIGIPIFGSAILGYGSL VPMVGYVLVFDFLRCMVHSNTEVIPHQLFQTLPFLKYLISTPTYNSLHHAEMGTNFCLFMPIFDAIWKTLNTNSWELHKKQRAKAGKYGRVADFVFLAHV VDVSSSMHSPYVFRTVSSLPYKFQAFLIPYWPTTFMVMLMMWAKARVFIQSFYTLRGKLHETWVVPRFGFQYFLPFAKEGINKRIDEAIIKADRLGVKVL SLAALNKNEALNGGGTLFVNKHPDLRVRIVHGNTLTAAVILNEIGDDIEEVFLTGATSKLGRAIALYLCRRRVRVLMLTLSTERFQKIQKEAPVECQSYL VQVTKYQAARNCKTWIVGKWITPREQNWAPSGAHFHQFVVPPIFAFRKDCTYGDLAAMRLPNDVEGLGCCEYTMDRGVVHACHAGGVVHFLEGWKHHEVG AIDVDRIDLVWNAAMKHGLKPVSNMNKSKQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10019971 [exp]	0	1
AT5G57670			Protein kinase superfamily pro...		Lus10019990 [exp]	2.0	0.8611
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008995 [exp]	3.9	0.8583
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10029100 [exp]	4.9	0.8748
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009621 [exp]	8.7	0.8450
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008999 [exp]	10.2	0.8296
AT1G27940		ABCB13, PGP13	ATP-binding cassette B13, P-gl...		Lus10017270 [exp]	10.5	0.8344
AT5G51160			Ankyrin repeat family protein ...		Lus10029008 [exp]	11.7	0.8327
AT2G21200			SAUR-like auxin-responsive pro...		Lus10008992 [exp]	13.8	0.8236
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	20.8	0.8087
AT3G06120	bHLH	MUTE, bHLH045	MUTE, basic helix-loop-helix (...		Lus10010503 [exp]	24.3	0.8043

Compare expression of checked genes

Lus10019971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.