Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57770 306 / 2e-101 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015501 [exp] 645 / 0 AT5G57770 363 / 7e-124 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G099000 [exp] 372 / 2e-127 AT5G57770 338 / 7e-114 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05703 [flax] [poplar] Auxin_canalis Auxin canalisation CL0266 [flax] [poplar] PH PF08458 [flax] [poplar] PH_2 Plant pleckstrin homology-like region
Representative CDS sequence Show only first row Show all	>Lus10019972 pacid=23156256 polypeptide=Lus10019972 locus=Lus10019972.g ID=Lus10019972.BGIv1.0 annot-version=v1.0 ATGGCAACAACAACAGTTCCCTCTGAGGCACATCCTGAGACAATGGATTTCCTCTCAAGGGCTTGGTGTGATTTTGCAGTTCAAACCTCTGATCCACCTC AACACTTTCAAGATCATAACTCCCTCCTTCTCCTTGACAACAAACCAGCCACTAAACTAGATAGCAATCTCGCGATATCTCCTGCTTTCTTGAATATGGA GCAGAAAGGCATGAAGATGGATGATCCAGAGCTCACATCTCTACCGCCTTGGAAGTCTAACGATTTGAAGTCATGGATATGGATGCAACAAGCAATGCAT CCTGAACTAAACTACAGTAAGAAGAAATGGGTGCAATGGAAGATGGGTCCATTCAAGATGACATCAATCAAGAAATGGGTGAAGGAGATGAAATTGAGGA GAAAAGAAGAGGGGAGGCTAGCAAGAGCTGAAGTCCACGCAGCAATGTCAATGGCTGGTCTAGCGGCTGCTCTGGCTGCAATAGCTGCTGTTGATAAATC GGAAAAGGACATCAATTCTCGAGACGATGCAGTGGCTTCTGCTGCAGCCTTGGTGGCCGCACATTGTGCGAAAATCGCAGAATCAATGGGAGCAAAGAAG GAGCAACTGAGCAGTGTTATAGGCTCCGCCATGAATGGCGGTGCAAGTGACATCCTTACTCTCACAGCTGCTGCCACTACATCACTAAAAGGTGCAGCTA CTCTAAAGGCTAGAACAGAGTGCAAGAACAGTTTGATGAATGGAAGTGTTCCAATTCTCCCTATTGAGGACAGTCATGAAGCTCACCTTGACTTCAACAA GAACAGATCAATGCTTTCCTCTGGCACAGAGCTTCATGTTGAAACACCAGATGGAGATTTTCGAGTGAGGTGGATCTCCATCATCCAAGATAGGCAAGCC AAGGTTGTCCTAAGAATGAGAAAGCTAAATCTGTTCAAAACTAAAATGGAAAGTATAGTAATGGACATTCATGCTGAGTTGTACAAAGACACATATGAAG CTGCACAAGAGACTGATACATGTTACCTGATCGTGTTATCGACAAATCAAGGGATGATTAAGCTCGACATGGGAGATGATTATGATCGTTACAAGACTTG GGCTGCAACCATTACTCATATGCTAGCTCTCTCATCCTCCTTAAGCAAATATGAGCTCCAATTCTAA
AA sequence Show only first row Show all	>Lus10019972 pacid=23156256 polypeptide=Lus10019972 locus=Lus10019972.g ID=Lus10019972.BGIv1.0 annot-version=v1.0 MATTTVPSEAHPETMDFLSRAWCDFAVQTSDPPQHFQDHNSLLLLDNKPATKLDSNLAISPAFLNMEQKGMKMDDPELTSLPPWKSNDLKSWIWMQQAMH PELNYSKKKWVQWKMGPFKMTSIKKWVKEMKLRRKEEGRLARAEVHAAMSMAGLAAALAAIAAVDKSEKDINSRDDAVASAAALVAAHCAKIAESMGAKK EQLSSVIGSAMNGGASDILTLTAAATTSLKGAATLKARTECKNSLMNGSVPILPIEDSHEAHLDFNKNRSMLSSGTELHVETPDGDFRVRWISIIQDRQA KVVLRMRKLNLFKTKMESIVMDIHAELYKDTYEAAQETDTCYLIVLSTNQGMIKLDMGDDYDRYKTWAATITHMLALSSSLSKYELQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57770			Plant protein of unknown funct...		Lus10019972 [exp]	0	1
AT5G09760			Plant invertase/pectin methyle...		Lus10013721 [exp]	2.4	0.7959
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10035859 [exp]	2.4	0.8049
AT3G61490			Pectin lyase-like superfamily ...		Lus10007922 [exp]	10.5	0.6781
AT3G17130			Plant invertase/pectin methyle...		Lus10016319 [exp]	23.6	0.7267
AT5G55830			Concanavalin A-like lectin pro...		Lus10022521 [exp]	24.7	0.6038
AT2G38870			Serine protease inhibitor, pot...		Lus10014740 [exp]	30.7	0.6536
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10034768 [exp]	31.7	0.6368
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Lus10030484 [exp]	33.4	0.6478
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10042549 [exp]	33.9	0.6541
AT4G30400			RING/U-box superfamily protein...		Lus10015502 [exp]	45.2	0.6099

Compare expression of checked genes

Lus10019972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.