Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18650 213 / 8e-65 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT4G30400 207 / 3e-62 RING/U-box superfamily protein (.1) AT5G40250 166 / 1e-47 RING/U-box superfamily protein (.1) AT1G23980 142 / 9e-39 RING/U-box superfamily protein (.1) AT5G57750 130 / 6e-36 RING/U-box superfamily protein (.1) AT3G48030 125 / 1e-32 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT3G60220 102 / 4e-24 ATL4 TOXICOS EN LEVADURA 4 (.1) AT5G05810 100 / 3e-23 ATL43 RING/U-box superfamily protein (.1) AT4G40070 96 / 6e-22 RING/U-box superfamily protein (.1) AT5G17600 94 / 5e-21 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015502 [exp] 647 / 0 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1) Lus10032161 [exp] 163 / 3e-46 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1) Lus10012987 [exp] 162 / 5e-46 AT5G40250 302 / 7e-101 RING/U-box superfamily protein (.1) Lus10014526 [exp] 162 / 6e-46 AT5G40250 423 / 6e-148 RING/U-box superfamily protein (.1) Lus10029178 [exp] 160 / 3e-45 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10008899 [exp] 127 / 2e-34 AT4G30400 95 / 3e-22 RING/U-box superfamily protein (.1) Lus10023206 [exp] 127 / 3e-34 AT4G30400 91 / 7e-21 RING/U-box superfamily protein (.1) Lus10023617 [exp] 97 / 4e-22 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10012745 [exp] 95 / 1e-21 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098500 [exp] 298 / 4e-97 AT4G30400 339 / 7e-112 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 272 / 6e-87 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1) Potri.001G351466 [exp] 165 / 3e-47 AT5G40250 355 / 2e-121 RING/U-box superfamily protein (.1) Potri.017G072300 [exp] 164 / 6e-47 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1) Potri.015G073600 [exp] 140 / 6e-38 AT5G40250 259 / 1e-83 RING/U-box superfamily protein (.1) Potri.012G078200 [exp] 139 / 1e-37 AT5G40250 241 / 1e-76 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 98 / 3e-22 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 96 / 1e-21 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 93 / 8e-21 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 92 / 2e-20 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10019973 pacid=23156213 polypeptide=Lus10019973 locus=Lus10019973.g ID=Lus10019973.BGIv1.0 annot-version=v1.0 ATGGCTTGGGTTTCCGTCCAAATCAAAGAAAGTTCAATCCTTTCCACAACCGATCCACCTCCACCGCTCGCCGCCGCCGTTTACGGCGACGGCGGGGGAG CCTTCAGCTTGGAGAACAAGGTGAGCCCAAGCATTCTCCTCATAATCATAATCCTCGCAATAGTCTTCTTCATTTCCGGCCTCCTCCACCTCTTAGTCCG CTTCGTAATCCGCCCGCCGCCCCGTCGCGACGAATTCGACGGCAACGCAGCCGCTGTCACCACCGTCTTGCAGGGTCAACTCCAACAGCTCTTCCACCTC CACGACTCCGGTGTCGACCAATCCTTCATCGACACTCTACCCATCTTTCTCTACAAGTCCATCCTCGTCGGACCCGGGTCGGCAAAGTCTGACCCGTTCG ACTGCGCCGTGTGCTTGTCGGAGTTCGAGCCGGAGGACAAGCTCCGGTTACTACCCAACTGCAGCCACGCTTTCCACATGGACTGCATTGACACGTGGCT TCTCTCCCACTCAACTTGCCCTCTCTGCCGATCTTCTCTCAACAATGGAGCCAACTCTTCGAACAACGCTCCTCCGATTGTTCTGGTTCTCGAATCCCGA AGTCAGAGCTCCGGCGAATTAGTCAACGATATGGAAAGCAGCAATCTTGGCCGGCGGAGTGGCTCCGAGTTGGGTTCGTTTCGAGCTGAATTTCCAGATC CGGAAAGGGTGGTCCGGGTAAAATTGGGGAAGTTTCGAAACGTTGAAAACAGGGGAGGAGAAATTAGCAATGTCGATGTGAGGAGGTGCTACTCGATGGG GTCGTTCCAGTACGTTATGGATGACAACTCTTCGATCCAAGTTCCGATTACGACGATTCCGCCGGCGACGAGGAGGAAGAAGTCCGGTTGTCGCCGCGGA GCAATGTCGGTGTGCGGGATCGAATCGGCGAGGGAATTTGGAGGGTTTGACGGCCGCAACATTATTTCAGAGAAACAAGAGAGCTCCGAGGCAGGGGATT TGGGTTCGAAACGGAGTGCAGTTTCGTTTAGGGTTCCGGGGAGCTGCGAGTTAGGGTTTTGTTGTGATGAGGGAAGTGGGGAATTGGACAAGACGCCGTC TTTTGCTAGGAGGACTCTGCTCTGGCTTTCCGGCCGGCAGAGTAATAAGGTTGTTCACTCTAACTTCACCTCCAATGTTTAG
AA sequence Show only first row Show all	>Lus10019973 pacid=23156213 polypeptide=Lus10019973 locus=Lus10019973.g ID=Lus10019973.BGIv1.0 annot-version=v1.0 MAWVSVQIKESSILSTTDPPPPLAAAVYGDGGGAFSLENKVSPSILLIIIILAIVFFISGLLHLLVRFVIRPPPRRDEFDGNAAAVTTVLQGQLQQLFHL HDSGVDQSFIDTLPIFLYKSILVGPGSAKSDPFDCAVCLSEFEPEDKLRLLPNCSHAFHMDCIDTWLLSHSTCPLCRSSLNNGANSSNNAPPIVLVLESR SQSSGELVNDMESSNLGRRSGSELGSFRAEFPDPERVVRVKLGKFRNVENRGGEISNVDVRRCYSMGSFQYVMDDNSSIQVPITTIPPATRRKKSGCRRG AMSVCGIESAREFGGFDGRNIISEKQESSEAGDLGSKRSAVSFRVPGSCELGFCCDEGSGELDKTPSFARRTLLWLSGRQSNKVVHSNFTSNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30400			RING/U-box superfamily protein...		Lus10019973 [exp]	0	1
AT4G32000			Protein kinase superfamily pro...		Lus10041026 [exp]	1.7	0.8848
AT5G12440	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10014914 [exp]	3.5	0.8614
AT2G37195			unknown protein		Lus10019937 [exp]	7.7	0.8631
AT5G07040			RING/U-box superfamily protein...		Lus10005389 [exp]	10.7	0.8148
AT1G04040			HAD superfamily, subfamily III...		Lus10023731 [exp]	12.4	0.8350
AT3G28040			Leucine-rich receptor-like pro...		Lus10035687 [exp]	12.6	0.8779
AT5G38790			unknown protein		Lus10034101 [exp]	15.0	0.8202
AT1G04040			HAD superfamily, subfamily III...		Lus10011774 [exp]	19.6	0.8597
AT5G38650			Proteasome maturation factor U...		Lus10005377 [exp]	21.5	0.8437
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10030383 [exp]	21.5	0.8574

Compare expression of checked genes

Lus10019973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.