Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57740 586 / 0 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT5G07270 434 / 4e-148 XBAT33 XB3 ortholog 3 in Arabidopsis thaliana (.1) AT2G28840 111 / 2e-26 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT5G02620 73 / 2e-13 ATANK1, ANK1 ankyrin-like1 (.1) AT5G14230 72 / 4e-13 unknown protein AT3G12360 71 / 7e-13 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT1G07710 66 / 3e-11 Ankyrin repeat family protein (.1) AT3G04710 62 / 5e-10 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT4G19150 60 / 7e-10 Ankyrin repeat family protein (.1.2) AT2G31820 61 / 2e-09 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015503 [exp] 880 / 0 AT5G57740 614 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10005754 [exp] 413 / 8e-140 AT5G07270 753 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Lus10027441 [exp] 382 / 5e-128 AT5G07270 719 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Lus10016561 [exp] 123 / 2e-30 AT2G28840 640 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10040829 [exp] 79 / 1e-15 AT2G28840 546 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10020272 [exp] 69 / 4e-12 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10003308 [exp] 69 / 5e-12 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10003748 [exp] 67 / 1e-11 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10023460 [exp] 66 / 5e-11 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098400 [exp] 739 / 0 AT5G57740 611 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.006G176600 [exp] 706 / 0 AT5G57740 597 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.012G139100 [exp] 445 / 2e-152 AT5G07270 782 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.015G141400 [exp] 445 / 2e-152 AT5G07270 795 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.001G238800 [exp] 136 / 5e-35 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.009G030000 [exp] 110 / 5e-26 AT2G28840 619 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.002G213200 [exp] 76 / 2e-14 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 71 / 7e-13 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 71 / 9e-13 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 68 / 6e-12 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10019974 pacid=23156115 polypeptide=Lus10019974 locus=Lus10019974.g ID=Lus10019974.BGIv1.0 annot-version=v1.0 ATGAAGTTTCTGAGCCTGATGGGCAACTCTTTTGGATGTTCTGCATCTGGGGAGAGATTAGTGTCAGCTGCTAGAGATGGTGATCTTCAAGAAGCTAAGG CCTTGTTGGAATGGAATCCAAGGCTTGCCAGATACTCAACTTTTGGAGTCAGGAATTCCCCTCTTCATTACTCTGCAGCTCAAGGACACCATGAGATAGT TTCTCTATTGCTTGAGTCTGGAGTTGATATCAATCTGAGAAACTACCGTGGCCAGACTGCATTAATGCAAGCTTGTCAACATGGCCATTGGGAGGTTGTT CTGACTCTGATGCTTTTTCGAGCGAATATTCACAGAGCGGATTATCTTAATGGTGGTACCGCCTTGCATTTGGCTGCATTGAATGGTCACACCAGATGCA TACGGCTACTTCTCGCCGATTACATCCCTAGTATTCCTGATTGCTGGGATTCATTAAGAAACAGATCTAACTGTGACGAATTTAAGCAGTCTGCCTCCGA ATTTGATGAAGGGGCTCTCCATGAGGTTATCAACAAACCTGCTGATGGAGGAATCTCTGCTCTACACATGGCTGCACTGAATGGACATGTCGAAACTGTT CAGTTGCTGTTGGATCTTGGAGCTGCTGTTTCTGAGGTTACTGTTGAAGATGGAACCACAATTGATCTGATAGGTGCCGGAAGCACAGCTCTTCATTATG CTGCTTGTGGTGGAAACTTACAATGCTGCCAGATGTTGATTTCCAAGGGTGCCAGTCTCACTGCTGAAAATTCAAATGGTTGGACTGCATTAATGGTTGC CCGTTCATGGCATCGAAATGAATTAGAGGAAATCCTTACCCAACAACCTCCAGAGCAGCAGCAGCAGGCGTGTTCTTCATCGTATATCTCGCTACCCCTC ATGAGCATTGTCAAAATTGCTCGGGAATGTGGATGGAGGAACAACGATTTGCTGCCAACATGCCAAGATCCATGCGTTGTATGCTTGGAAGCAACCTGCA GAGTTGCCGCGGCAGGGTGCAACCATGAGTTCTGCACGCGATGTGCATTGTACCTATGTTCGACAATCTGCAGCGCGAAAACCTCTCAAGGTCCACCAGG GTCAGTTCCATGCCCACTATGCCGCCATGGCATAGTTTCCTTCGTCAAACTTGCAGGGACAAAGCCAGTGTCCAAGTCCATGGGCAGAACAAGTTTGTCG CTGCCATTCTGTGCATGCTCATCAGAGGAGCTAGAGCTAGAACCCAGCTTGCTGAATCAACCATTGTGCAAGCCGGAATTCCATTGCACGAGTTTCCCAT CTCGTTCGTCCTCATTCCGTTCCTTGAGCTGCCAGAAGTTCCCGTTCAATGCCAGCCGGTGTATTGGATCTCCGGACACAAATCCGTCCTTAGTCCCTTC CTCTGTCGTTGACCCGAGCATCCGTGAGCAGCTCGTGAGATGCTCAAGGTCAAGGCTCAGGAAATCGGTTTCGAACCATGATCGTAAAAGGTCTTGGATT TCGACACTCAATCAGTATGTAACCATAGGGAACGGATGCTAA
AA sequence Show only first row Show all	>Lus10019974 pacid=23156115 polypeptide=Lus10019974 locus=Lus10019974.g ID=Lus10019974.BGIv1.0 annot-version=v1.0 MKFLSLMGNSFGCSASGERLVSAARDGDLQEAKALLEWNPRLARYSTFGVRNSPLHYSAAQGHHEIVSLLLESGVDINLRNYRGQTALMQACQHGHWEVV LTLMLFRANIHRADYLNGGTALHLAALNGHTRCIRLLLADYIPSIPDCWDSLRNRSNCDEFKQSASEFDEGALHEVINKPADGGISALHMAALNGHVETV QLLLDLGAAVSEVTVEDGTTIDLIGAGSTALHYAACGGNLQCCQMLISKGASLTAENSNGWTALMVARSWHRNELEEILTQQPPEQQQQACSSSYISLPL MSIVKIARECGWRNNDLLPTCQDPCVVCLEATCRVAAAGCNHEFCTRCALYLCSTICSAKTSQGPPGSVPCPLCRHGIVSFVKLAGTKPVSKSMGRTSLS LPFCACSSEELELEPSLLNQPLCKPEFHCTSFPSRSSSFRSLSCQKFPFNASRCIGSPDTNPSLVPSSVVDPSIREQLVRCSRSRLRKSVSNHDRKRSWI STLNQYVTIGNGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Lus10019974 [exp]	0	1
AT1G49180			protein kinase family protein ...		Lus10020855 [exp]	2.8	0.8783
AT5G64500			Major facilitator superfamily ...		Lus10002935 [exp]	5.3	0.8637
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10015229 [exp]	6.0	0.8692
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10036364 [exp]	8.8	0.8682
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10030424 [exp]	12.0	0.8372
AT3G16340		ABCG29, ATPDR1,...	ATP-binding cassette G29, plei...		Lus10014150 [exp]	13.0	0.8197
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10041790 [exp]	19.1	0.8622
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10039556 [exp]	21.6	0.8386
AT5G61540			N-terminal nucleophile aminohy...		Lus10009560 [exp]	21.7	0.8632
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	31.1	0.7996

Compare expression of checked genes

Lus10019974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.