Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28030 322 / 3e-111 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT2G06025 73 / 1e-14 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G39000 48 / 3e-06 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) AT1G72030 47 / 8e-06 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015504 [exp] 264 / 4e-90 AT4G28030 134 / 1e-39 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10021559 [exp] 58 / 2e-09 AT2G06025 244 / 2e-80 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10023517 [exp] 52 / 2e-07 AT2G39000 388 / 4e-137 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10040401 [exp] 52 / 2e-07 AT2G39000 386 / 3e-136 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10009229 [exp] 49 / 2e-06 AT2G39000 320 / 5e-112 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10037996 [exp] 49 / 2e-06 AT2G39000 335 / 2e-115 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10021995 [exp] 47 / 7e-06 AT1G72030 181 / 4e-56 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10042534 [exp] 47 / 8e-06 AT1G72030 179 / 3e-55 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G176500 [exp] 323 / 9e-112 AT4G28030 284 / 2e-96 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.006G142100 [exp] 74 / 3e-15 AT2G06025 347 / 1e-120 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.010G222900 [exp] 51 / 3e-07 AT2G39000 370 / 5e-130 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.008G039300 [exp] 51 / 4e-07 AT2G39000 387 / 1e-135 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.005G054600 [exp] 50 / 8e-07 AT1G72030 216 / 1e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10019975 pacid=23156123 polypeptide=Lus10019975 locus=Lus10019975.g ID=Lus10019975.BGIv1.0 annot-version=v1.0 ATGGCGCTCGTTTCATCTTCACCTCCAATCCCTCCATTCTCTTGCCGTATCTCTTCACAGCCGCCGACGGCTCACTACCGTCATCCTCACATACTATTCT CCTCTCCCGCTCGCTCCTTTCGCCTCCAATCGATCGCTCCTCCATCGGAAGTTTGCTCACCCTACGAGCTCGACAAATCGACCCTCTCAATCTCCGTCGC TGACTCCGACGACGATCTCTGGGCCGCCGCCCGCCTCCGCACTCGGTCGTTCCACGAGTTCAACTCGTCAGCGTACGGCATCCAGGAGCACAGGAAGTAC TTAGCTGAGAAAGAGTTTGAAGCAATGAAGGAACGGATTGATGGGATAAGGCCGATGTTTAAGAAGGTTTCTTGCATTAATGCTACTCTTCCGCTTTCTC AATTTAGTGAAGTTTGCGAAGATCTGTCCGCCGAATGTAAGTTTAGTAACAATGGTGAAGATAGGGTGGTGGTTGGAAGTCTTGATCTTAATCAATGTCT GAGACTTCCGGATGAAATTACCGGGAAGAGACCAGAGGGGATTGGCGCTGACTTTGCAAGGGCATACTTGAGCAATGTATGTGTCGCCAAGGAACTTCAC AGAAATGGGTTAGGCCGTGACCTTGTGTCGCAGTCCAAGGTAGTTGCTCGAGAATGGGGCATCACTGATATGTATGTCCATGTTGCGGTGGACAATGAAC CGGCAAAGAAGCTTTACATGAACACCGGTTTTGTGTACGAGAACGATGAGCCGGCATGGCAAGCCAGGTTTCTCGACCGGCCTCGAAGGCTTTTGTTGTG GTTTGGTTTGTCAGATATGCTAGAAATGTTGGGGTGA
AA sequence Show only first row Show all	>Lus10019975 pacid=23156123 polypeptide=Lus10019975 locus=Lus10019975.g ID=Lus10019975.BGIv1.0 annot-version=v1.0 MALVSSSPPIPPFSCRISSQPPTAHYRHPHILFSSPARSFRLQSIAPPSEVCSPYELDKSTLSISVADSDDDLWAAARLRTRSFHEFNSSAYGIQEHRKY LAEKEFEAMKERIDGIRPMFKKVSCINATLPLSQFSEVCEDLSAECKFSNNGEDRVVVGSLDLNQCLRLPDEITGKRPEGIGADFARAYLSNVCVAKELH RNGLGRDLVSQSKVVAREWGITDMYVHVAVDNEPAKKLYMNTGFVYENDEPAWQARFLDRPRRLLLWFGLSDMLEMLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10019975 [exp]	0	1
AT4G26860			Predicted pyridoxal phosphate-...		Lus10032558 [exp]	1.0	0.9201
AT5G48545		HINT3	histidine triad nucleotide-bin...		Lus10025883 [exp]	2.2	0.8514
AT2G35200			unknown protein		Lus10036051 [exp]	2.6	0.8475
AT1G48320			Thioesterase superfamily prote...		Lus10006220 [exp]	3.3	0.8363
AT1G02910		LPA1	LOW PSII ACCUMULATION1, tetrat...		Lus10036345 [exp]	4.2	0.8172
AT5G57040			Lactoylglutathione lyase / gly...		Lus10017158 [exp]	9.5	0.8920
AT5G19590			Protein of unknown function, D...		Lus10017733 [exp]	10.6	0.8197
AT3G26070			Plastid-lipid associated prote...		Lus10020982 [exp]	11.0	0.8786
AT1G71950			Proteinase inhibitor, propepti...		Lus10025848 [exp]	11.2	0.8221
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042241 [exp]	12.1	0.8146

Compare expression of checked genes

Lus10019975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.