Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02920 241 / 2e-79 ATRPA32B Replication protein A, subunit RPA32 (.1.2) AT2G24490 184 / 6e-57 ATRPA32A, RPA2, ATRPA2, ROR1 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015505 [exp] 450 / 7e-160 AT3G02920 231 / 8e-74 Replication protein A, subunit RPA32 (.1.2) Lus10026954 [exp] 190 / 4e-59 AT2G24490 252 / 7e-84 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2) Lus10020154 [exp] 179 / 5e-55 AT2G24490 243 / 3e-80 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2) Lus10026953 [exp] 112 / 1e-27 AT5G10630 327 / 1e-104 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10042621 [exp] 46 / 6e-06 AT1G07130 169 / 2e-54 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G091700 [exp] 313 / 1e-107 AT3G02920 246 / 3e-81 Replication protein A, subunit RPA32 (.1.2) Potri.006G167600 [exp] 297 / 3e-101 AT3G02920 219 / 9e-71 Replication protein A, subunit RPA32 (.1.2) Potri.006G275700 [exp] 185 / 3e-57 AT2G24490 251 / 3e-83 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2) Potri.006G272000 [exp] 54 / 2e-09 AT2G24490 73 / 4e-17 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2) Potri.005G212900 [exp] 42 / 0.0002 AT1G07130 182 / 1e-59 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain CL0123 [flax] [poplar] HTH PF08784 [flax] [poplar] RPA_C Replication protein A C terminal
Representative CDS sequence Show only first row Show all	>Lus10019976 pacid=23156194 polypeptide=Lus10019976 locus=Lus10019976.g ID=Lus10019976.BGIv1.0 annot-version=v1.0 ATGTACACAGGAGCAGGAGGCGGAGGAAGTGACTTCGATGGTGGCTCATCACTCTTTAATGGCGGCGGATTCATGCTTCCCGAGACCACTCAAACTCACG ATTTCGCCGGCACCTCTTCTTCCTCCAACAAGAAGAGTGGTCTCAAATGCCTGCTGCCACTTACTGTGAAGCAGATAAGCAAGCTAGCGACTTCTGATGA GTCCAATTTCACGTGTGATGGTGTTGAGGTGACCAATGTTGTTATTGTTGGGAGGGTATGTAAGAAGGAAGACAAAGTGAGTGAGTACACATGCTTAATT GATGACGGCACAGGGCAGATCGAATGTTCCAGATGGATTCAGGAATCCCTTGATACTGAAGAAGTTGAAGGAATCTCAGTTGGATCATATGTGCGTGTGC ATGGACACTTGAGGGGCTTGCAGGGCAGAAGGTTCATAAATGTCTTTTCTATTAGGCCCGTCACTGATTACAACGAGGTTACAAGCCACTTCATCGAGTG CATATACGTCCACTTCTACAACACCAAGAATCGAGGTGCCGGTGCCACTCCTCAGACACAGCTGCCAAATCCCACCCGACCAAGCAACAACCTTCCAAGA GGGATGCAATCTGCACAGCCAGTTCAGTCTGCACCTTATCATGGTGGTGATAGGATGACCAACCTCGGGGAGAAGATACTGAATTTAATGCAGCAACAGC CATATGTGGCTAGCGAAGACGGAATACACAGAGACATCATTGCTCATCAGCTACAAGTTCCAATGCATACGATCATGCAAGAAATGCAAGCTCTTATCGA CAATGGAATTGTTTACTCAACAATCGATGATGACCACTACAAATCAACCATCAATGGTTGA
AA sequence Show only first row Show all	>Lus10019976 pacid=23156194 polypeptide=Lus10019976 locus=Lus10019976.g ID=Lus10019976.BGIv1.0 annot-version=v1.0 MYTGAGGGGSDFDGGSSLFNGGGFMLPETTQTHDFAGTSSSSNKKSGLKCLLPLTVKQISKLATSDESNFTCDGVEVTNVVIVGRVCKKEDKVSEYTCLI DDGTGQIECSRWIQESLDTEEVEGISVGSYVRVHGHLRGLQGRRFINVFSIRPVTDYNEVTSHFIECIYVHFYNTKNRGAGATPQTQLPNPTRPSNNLPR GMQSAQPVQSAPYHGGDRMTNLGEKILNLMQQQPYVASEDGIHRDIIAHQLQVPMHTIMQEMQALIDNGIVYSTIDDDHYKSTING

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02920		ATRPA32B	Replication protein A, subunit...		Lus10019976 [exp]	0	1
AT5G14530			Transducin/WD40 repeat-like su...		Lus10014558 [exp]	5.7	0.8758
AT5G64200		ATSC35, At-SC35	ARABIDOPSIS THALIANA ORTHOLOG ...		Lus10023802 [exp]	14.0	0.8558
AT3G07590			Small nuclear ribonucleoprotei...		Lus10003727 [exp]	18.8	0.8522
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10023817 [exp]	20.4	0.8601
AT2G03170		ASK14	SKP1-like 14 (.1)		Lus10031171 [exp]	24.7	0.8315
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032156 [exp]	25.3	0.8057
AT2G03190		ASK16	SKP1-like 16 (.1)		Lus10031747 [exp]	27.5	0.8546
AT4G26670			Mitochondrial import inner mem...		Lus10043170 [exp]	34.9	0.8500
AT2G32980			unknown protein		Lus10030015 [exp]	39.0	0.8175
AT2G27730			copper ion binding (.1)		Lus10020624 [exp]	40.7	0.8453

Compare expression of checked genes

Lus10019976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.