Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49480 41 / 7e-05 B3 REM19, RTV1 related to vernalization1 1 (.1) AT3G18990 41 / 0.0001 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023843 [exp] 161 / 8e-49 AT3G18990 81 / 9e-17 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10032159 [exp] 154 / 4e-46 AT3G18990 93 / 8e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10000160 [exp] 138 / 3e-43 ND / Lus10014528 [exp] 141 / 4e-41 AT3G18990 95 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10015505 [exp] 137 / 8e-40 AT3G02920 231 / 8e-74 Replication protein A, subunit RPA32 (.1.2) Lus10040408 [exp] 110 / 6e-32 ND 41 / 8e-05 Lus10021007 [exp] 85 / 2e-20 AT3G18990 87 / 4e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027942 [exp] 56 / 8e-10 AT3G18990 69 / 3e-13 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010759 [exp] 54 / 4e-09 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 57 / 3e-10 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 44 / 1e-05 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10019977 pacid=23156144 polypeptide=Lus10019977 locus=Lus10019977.g ID=Lus10019977.BGIv1.0 annot-version=v1.0 ATGAAGAAGTCAACAATAGTCAAAACCAAGAGGTTCCAATTCAGGTTCATGAAGCTCTCCGCAGCGACCCAGAGAGCGATCCGGACAGCCATCGATAGCG ATCCGAAGAACCCTTCGTTTATGATCGTCATCACGAGACATCAGCTACAGTCAGGAAACATGGACTTTCCGGCCGGGATCACAGACAGCAGCTACATGAA TGAAGATTTGTTGAAGGTAACTCTACGTGTGTTGGGCAAAGAGGAGGTGGACGAGAGGAACTTTACGCTGTCCGAGGCGAAACGGGATCGGAGGAAGTAT ATATCTGGGTGGATGGGGTTATGCACGAAACATAAGTTGGAAGCGGGAGACGTCTGTTTGCTCGAACTTGTCGACCCCGAAACTAACGTCTTCAACGTTC ACATATTCCATGCAGGTCGTGGTTGA
AA sequence Show only first row Show all	>Lus10019977 pacid=23156144 polypeptide=Lus10019977 locus=Lus10019977.g ID=Lus10019977.BGIv1.0 annot-version=v1.0 MKKSTIVKTKRFQFRFMKLSAATQRAIRTAIDSDPKNPSFMIVITRHQLQSGNMDFPAGITDSSYMNEDLLKVTLRVLGKEEVDERNFTLSEAKRDRRKY ISGWMGLCTKHKLEAGDVCLLELVDPETNVFNVHIFHAGRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10019977 [exp]	0	1
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10005599 [exp]	7.3	0.5704
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Lus10003361 [exp]	21.4	0.4693
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021456 [exp]	23.3	0.4729
AT1G07060			unknown protein		Lus10031856 [exp]	29.8	0.4137
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	30.7	0.4668
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	32.6	0.4668
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	34.4	0.4668
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10008372 [exp]	36.0	0.4668
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	37.6	0.4668
AT1G55790			Domain of unknown function (DU...		Lus10032900 [exp]	43.8	0.4529

Compare expression of checked genes

Lus10019977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.