Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30380 156 / 3e-50 EXLB2 Barwin-related endoglucanase (.1) AT2G18660 83 / 2e-21 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1) AT2G45110 59 / 4e-11 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT1G65681 56 / 4e-10 EXPB6 beta expansin 6 (.1) AT2G40610 47 / 4e-07 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT3G45970 47 / 4e-07 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT3G60570 47 / 6e-07 ATHEXPBETA1.3, ATEXPB5 expansin B5 (.1) AT3G45960 46 / 1e-06 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT1G12560 46 / 2e-06 ATHEXPALPHA1.26, ATEXP7, ATEXPA7 expansin A7 (.1) AT1G65680 45 / 3e-06 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031759 [exp] 97 / 3e-26 AT2G18660 107 / 1e-30 plant natriuretic peptide A (.1) Lus10042435 [exp] 89 / 2e-23 AT4G30380 101 / 2e-28 Barwin-related endoglucanase (.1) Lus10026232 [exp] 84 / 4e-21 AT4G30380 90 / 2e-23 Barwin-related endoglucanase (.1) Lus10020130 [exp] 82 / 3e-20 AT2G18660 70 / 2e-15 plant natriuretic peptide A (.1) Lus10026930 [exp] 75 / 3e-17 AT2G18660 69 / 6e-15 plant natriuretic peptide A (.1) Lus10031760 [exp] 65 / 1e-14 AT4G30380 72 / 1e-17 Barwin-related endoglucanase (.1) Lus10026931 [exp] 66 / 7e-14 AT4G30380 64 / 9e-13 Barwin-related endoglucanase (.1) Lus10030078 [exp] 62 / 7e-13 AT2G18660 84 / 3e-21 plant natriuretic peptide A (.1) Lus10013118 [exp] 61 / 2e-12 AT4G30380 67 / 5e-15 Barwin-related endoglucanase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G176300 [exp] 159 / 1e-51 AT4G30380 165 / 6e-54 Barwin-related endoglucanase (.1) Potri.018G098200 [exp] 119 / 9e-36 AT4G30380 122 / 5e-37 Barwin-related endoglucanase (.1) Potri.018G101600 [exp] 104 / 7e-30 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1) Potri.006G179300 [exp] 103 / 2e-29 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1) Potri.003G218300 [exp] 96 / 4e-26 AT4G30380 86 / 2e-22 Barwin-related endoglucanase (.1) Potri.018G029100 [exp] 69 / 8e-16 AT2G18660 94 / 2e-25 plant natriuretic peptide A (.1) Potri.006G252200 [exp] 67 / 5e-15 AT2G18660 91 / 2e-24 plant natriuretic peptide A (.1) Potri.006G249500 [exp] 64 / 9e-14 AT4G30380 61 / 1e-12 Barwin-related endoglucanase (.1) Potri.018G031901 [exp] 63 / 1e-13 AT4G30380 57 / 3e-11 Barwin-related endoglucanase (.1) Potri.006G155000 [exp] 54 / 9e-10 AT2G18660 59 / 1e-11 plant natriuretic peptide A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10019978 pacid=23156160 polypeptide=Lus10019978 locus=Lus10019978.g ID=Lus10019978.BGIv1.0 annot-version=v1.0 ATGGAGAGAACCTCTATGATGATGATGATGATCATGATGGCCATGGCTGCCACACTTGCTTCAATAGCCACAGCAAATCCTGGCATTGCCACTTTCTACA CTAGTTACACCCCATCCGCGTGCTTTGGCAACCAAGATAAGGGAGTATGGATCGCGGCCGCGGGTCCAGCCCTATGGAACAATGGAGCTGTGTGTGGGAA AAAATTCCGAGTCAAATGCACGGGTCCACGGAACCCCGTACCCCATCCTTGTACGGGAAAGGAAGTTGTGGTCACGATTACGGATCATTGTCCCGGAGGG TGTCCTTCGACGCTCGATCTTTCGAGGGAAGCTTTTGCAACCATTGCCAACCCTGTAGCAGGGATCATCAACATTGAGTACACTCCGGACTTCCTATAA
AA sequence Show only first row Show all	>Lus10019978 pacid=23156160 polypeptide=Lus10019978 locus=Lus10019978.g ID=Lus10019978.BGIv1.0 annot-version=v1.0 MERTSMMMMMIMMAMAATLASIATANPGIATFYTSYTPSACFGNQDKGVWIAAAGPALWNNGAVCGKKFRVKCTGPRNPVPHPCTGKEVVVTITDHCPGG CPSTLDLSREAFATIANPVAGIINIEYTPDFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10019978 [exp]	0	1
AT1G27040			Major facilitator superfamily ...		Lus10006477 [exp]	12.8	0.8862
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10035196 [exp]	26.1	0.8720
AT5G18350			Disease resistance protein (TI...		Lus10018024 [exp]	27.9	0.8750
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10025838 [exp]	36.9	0.8745
AT4G16640			Matrixin family protein (.1)		Lus10028955 [exp]	52.4	0.8578
					Lus10031026 [exp]	63.0	0.8562
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10000469 [exp]	64.3	0.8469
AT3G47570			Leucine-rich repeat protein ki...		Lus10031043 [exp]	64.3	0.7945
AT5G10530			Concanavalin A-like lectin pro...		Lus10029555 [exp]	71.1	0.8400
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10029685 [exp]	75.8	0.8506

Compare expression of checked genes

Lus10019978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.