Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18670 104 / 1e-28 RING/U-box superfamily protein (.1) AT4G30370 89 / 9e-23 RING/U-box superfamily protein (.1) AT4G09100 68 / 4e-15 RING/U-box superfamily protein (.1) AT2G27940 69 / 9e-15 RING/U-box superfamily protein (.1) AT5G42200 66 / 7e-14 RING/U-box superfamily protein (.1) AT3G62690 63 / 3e-12 ATL5 AtL5 (.1) AT4G28890 62 / 7e-12 RING/U-box superfamily protein (.1) AT5G05810 61 / 2e-11 ATL43 RING/U-box superfamily protein (.1) AT3G16720 61 / 2e-11 ATL2 TOXICOS EN LEVADURA 2 (.1) AT2G42350 60 / 3e-11 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015506 [exp] 219 / 2e-74 AT2G18670 102 / 2e-28 RING/U-box superfamily protein (.1) Lus10008797 [exp] 70 / 7e-15 AT5G40250 77 / 2e-16 RING/U-box superfamily protein (.1) Lus10022223 [exp] 69 / 2e-14 AT1G23980 81 / 2e-17 RING/U-box superfamily protein (.1) Lus10012975 [exp] 66 / 4e-13 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10016163 [exp] 65 / 4e-13 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1) Lus10034953 [exp] 64 / 3e-12 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10034551 [exp] 60 / 5e-12 AT5G42200 112 / 2e-32 RING/U-box superfamily protein (.1) Lus10021842 [exp] 60 / 7e-12 AT5G42200 103 / 3e-29 RING/U-box superfamily protein (.1) Lus10011702 [exp] 62 / 2e-11 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098100 [exp] 139 / 3e-42 AT2G18670 91 / 2e-23 RING/U-box superfamily protein (.1) Potri.006G175700 [exp] 130 / 9e-39 AT2G18670 91 / 1e-22 RING/U-box superfamily protein (.1) Potri.018G098000 [exp] 123 / 5e-36 AT2G18670 87 / 6e-22 RING/U-box superfamily protein (.1) Potri.002G017400 [exp] 73 / 1e-16 AT5G42200 154 / 2e-48 RING/U-box superfamily protein (.1) Potri.005G244500 [exp] 69 / 6e-15 AT5G42200 149 / 3e-46 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 66 / 4e-13 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.002G153400 [exp] 64 / 6e-13 AT2G20030 83 / 8e-19 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 65 / 1e-12 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.001G235100 [exp] 64 / 1e-12 AT1G04360 98 / 3e-24 RING/U-box superfamily protein (.1) Potri.014G076800 [exp] 62 / 2e-12 AT4G10150 84 / 1e-19 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10019979 pacid=23156109 polypeptide=Lus10019979 locus=Lus10019979.g ID=Lus10019979.BGIv1.0 annot-version=v1.0 ATGCCTTCGAATCTGGATCCCCATCCACCGCCGGCTCCGGCAGCCGGCCATCATCCACCGCCTCCGTCGAAGCCTAACCAGAAGCTTCTTTCCATGATCC TGAAAGCCCTAATTATGTTCTTCATAACGACAACCTTCTGCTTCTTCCTCGGCGTGGCCGCAATCCTCCTCCTAATCGCAACCTTGGCCTTCCACCGCCA CACCAAATCCAGTCCGTCCGAGTACCTGAAGAAACTCCCCGATTTCAGATTCCCGAAGAGGACGAAATCGGAAGAAGGGGAGGTCGAGTGCGTTGTTTGC CTCGACGGGATTAAGCAAGGGCAATGGTGCAGGATGCTTTGCGGTTGTGGACACGTATTCCATCGCCGATGCGTGGATACTTGGCTGTCCAAGGTTCCCT CTTGTCCGATTTGTCGCGCTAGGGTTCAACTAGATTCAGGGAGTTGGGGTCAAGAAAGGAAGCCTTGTCTTAGTTGGATTGGAAGAACAAGTTGA
AA sequence Show only first row Show all	>Lus10019979 pacid=23156109 polypeptide=Lus10019979 locus=Lus10019979.g ID=Lus10019979.BGIv1.0 annot-version=v1.0 MPSNLDPHPPPAPAAGHHPPPPSKPNQKLLSMILKALIMFFITTTFCFFLGVAAILLLIATLAFHRHTKSSPSEYLKKLPDFRFPKRTKSEEGEVECVVC LDGIKQGQWCRMLCGCGHVFHRRCVDTWLSKVPSCPICRARVQLDSGSWGQERKPCLSWIGRTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18670			RING/U-box superfamily protein...		Lus10019979 [exp]	0	1
AT3G48660			Protein of unknown function (D...		Lus10003120 [exp]	1.4	0.9869
AT5G11420			Protein of unknown function, D...		Lus10019724 [exp]	2.4	0.9853
AT3G08030			Protein of unknown function, D...		Lus10019723 [exp]	3.0	0.9808
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10043044 [exp]	4.5	0.9766
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10034835 [exp]	5.5	0.9761
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10038904 [exp]	6.3	0.9802
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008188 [exp]	6.8	0.9645
					Lus10026740 [exp]	7.1	0.9729
AT3G08030			Protein of unknown function, D...		Lus10016394 [exp]	7.9	0.9664
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10030534 [exp]	8.8	0.9749

Compare expression of checked genes

Lus10019979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.