Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16850 139 / 9e-39 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015507 [exp] 261 / 3e-86 AT4G16850 127 / 1e-34 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097900 [exp] 171 / 5e-51 AT4G16850 162 / 9e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019980 pacid=23156224 polypeptide=Lus10019980 locus=Lus10019980.g ID=Lus10019980.BGIv1.0 annot-version=v1.0 ATGGCCGCCGACGGAACCAAATCTCTCTCCGTCGACCTCGACCACCGCCACATTACTCACCCAATCAAAATCCTCAGCGAGTCTTTACAAATTATCCTGA AAAGCAAACGCCTCTTTCTCTCCATCACGCTGTTCCTCTCTTGCCCTCTGTCCTTCCTCCTCTTCTCCCTCAATTTCTCCTCCTTCAGGCTCAAATCGCA GATCCTCCGCCTCGAATTCCTCGCCGCCGTAGCTCCCACTCGCTACGAATCTCGCCAGGTGTGGAAAGAATCTCGCGAGGTCTTTCTCTCCCTGCTCCGG ATCAAGCTCGTCCATCTCGTCCCGGCCAACCTCCTCGCCATATTGACAGCCATCGTCGCCGTCGATTCCACCGCCGGTGTAGTAGCAGGAAGGAAATCCT CGACGATAGTCGCGGCGGTTAAGCACGCCTGGACGAGGGTGTTGGTGACGTCGATCTGTATGTACGCGATCTCGTGGATGTACGCCGGTATTCCGGTTAC GATGATGGCGATGGTGGGCGGCGACGGCGGCGGAGGGATGCGGTTTGGGATTTGGGTGGTTGGGTTGGGGGTGGAGGTTTATTTGATGGCGGTGTTGGGG ATGGGATTGGCTGTTTCTATCTTGGAGAAGAAATCCGGGTGGGAGGCCATTCAGGTCGGGTTGGAATTAATGGACGGGTTGCGGGTTTGCGGTTGGGTTT TGTCGGGTTTGTTTGCGGTGGCGACTGGGTTGGTTGGGTGGGGGATGGAGTTGACGGTGGTGGATATCGGCGGAGTGGGCGATGATGTCAATGGGTTAGC TGGGGGATTGATGAGGTGTACGGCGGGGGGAGGGGGGGGGGGGGGGGCGGTGTTGGCGTTGGTGGGGTGTTACGCGGTGGTTGTGGTTTCGGGGTTTGTG GTGAGTACCGTGTTTTACAAGGAAGTTAGGAAACGACACGGGGTTAAAGAACAAGTAGATGGAATTTTAGACGCATGA
AA sequence Show only first row Show all	>Lus10019980 pacid=23156224 polypeptide=Lus10019980 locus=Lus10019980.g ID=Lus10019980.BGIv1.0 annot-version=v1.0 MAADGTKSLSVDLDHRHITHPIKILSESLQIILKSKRLFLSITLFLSCPLSFLLFSLNFSSFRLKSQILRLEFLAAVAPTRYESRQVWKESREVFLSLLR IKLVHLVPANLLAILTAIVAVDSTAGVVAGRKSSTIVAAVKHAWTRVLVTSICMYAISWMYAGIPVTMMAMVGGDGGGGMRFGIWVVGLGVEVYLMAVLG MGLAVSILEKKSGWEAIQVGLELMDGLRVCGWVLSGLFAVATGLVGWGMELTVVDIGGVGDDVNGLAGGLMRCTAGGGGGGGAVLALVGCYAVVVVSGFV VSTVFYKEVRKRHGVKEQVDGILDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16850			unknown protein		Lus10019980 [exp]	0	1
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Lus10030685 [exp]	9.2	0.9173
AT3G07440			unknown protein		Lus10020404 [exp]	12.7	0.9164
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10038952 [exp]	14.1	0.9195
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016494 [exp]	14.9	0.8950
AT5G48340			unknown protein		Lus10041085 [exp]	19.6	0.9052
AT1G11905			B-cell receptor-associated pro...		Lus10000048 [exp]	25.5	0.9091
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	31.0	0.9056
AT3G04970			DHHC-type zinc finger family p...		Lus10033823 [exp]	31.1	0.9063
AT4G27290			S-locus lectin protein kinase ...		Lus10038554 [exp]	36.5	0.8876
AT3G46220			unknown protein		Lus10000152 [exp]	38.0	0.8778

Compare expression of checked genes

Lus10019980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.