Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015508 [exp] 216 / 7e-71 AT2G18680 64 / 1e-11 unknown protein Lus10023204 [exp] 127 / 6e-36 AT2G18680 75 / 4e-15 unknown protein Lus10008900 [exp] 117 / 4e-31 AT4G30360 375 / 3e-122 cyclic nucleotide-gated channel 17 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019981 pacid=23156113 polypeptide=Lus10019981 locus=Lus10019981.g ID=Lus10019981.BGIv1.0 annot-version=v1.0 ATGCTGGCGTTGAGTCTCAACCCACGGCTTTTATCCGCGGTAATGCTTGTTTTAACCCTCGTGGGTTCAGTTTTGTACATGTACATACAAGCCGTGTTGA GTTTAGGGCTAGTGGTTTCGGTCGTGGAGCTTGAAGCGATTGGGAAGGCGGCTAAGATTGCACAAGGGATGCGGCTACATGGGCTAGTCATCAATCTGAT GTTTGGAGTGGTGGGTTGGGCTTTGTTCAGTTGTTTGGTTTGGGCCAGTTTTCAGTTGCTGGCGGCCGGACAAGTGTCTGTCGGGATGGGCTTGGCAGGG TTTAGAAGTCCGACGGTAGGCCAATTGTTTGTTGGGTGGGCTGTGTTTAATGGGTTTTGTTTGATTAAGATGTTGTGGTGGATGGCTTATACAGTTATGT TCTATGAAGGGATGAAAAGACGTGGGGAAGAGGTTGTTGAGATGGTGGAGGATGTGGAGTACACTAAAGTACCCACTGAAATCATGGTTTGA
AA sequence Show only first row Show all	>Lus10019981 pacid=23156113 polypeptide=Lus10019981 locus=Lus10019981.g ID=Lus10019981.BGIv1.0 annot-version=v1.0 MLALSLNPRLLSAVMLVLTLVGSVLYMYIQAVLSLGLVVSVVELEAIGKAAKIAQGMRLHGLVINLMFGVVGWALFSCLVWASFQLLAAGQVSVGMGLAG FRSPTVGQLFVGWAVFNGFCLIKMLWWMAYTVMFYEGMKRRGEEVVEMVEDVEYTKVPTEIMV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019981 [exp]	0	1
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10017170 [exp]	5.3	0.8812
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	6.2	0.9160
AT2G26820		ATPP2-A3	phloem protein 2-A3 (.1)		Lus10026891 [exp]	6.9	0.8896
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10037323 [exp]	7.7	0.8764
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	8.7	0.9160
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10015748 [exp]	10.6	0.6947
					Lus10027066 [exp]	10.7	0.9160
					Lus10006918 [exp]	12.3	0.9160
					Lus10007508 [exp]	13.8	0.9160
AT1G04670			unknown protein		Lus10004041 [exp]	15.1	0.9160

Compare expression of checked genes

Lus10019981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.