Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30360 964 / 0 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT2G24610 924 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT5G14870 809 / 0 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT3G48010 774 / 0 ATCNGC16 cyclic nucleotide-gated channel 16 (.1) AT2G28260 721 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT1G15990 687 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT4G30560 682 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT2G23980 681 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT1G19780 680 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT5G57940 676 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015510 [exp] 1423 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10023203 [exp] 1183 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10042434 [exp] 884 / 0 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026233 [exp] 862 / 0 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10020122 [exp] 821 / 0 AT2G24610 879 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026924 [exp] 810 / 0 AT2G24610 868 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10002363 [exp] 800 / 0 AT3G48010 919 / 0.0 cyclic nucleotide-gated channel 16 (.1) Lus10039486 [exp] 793 / 0 AT5G14870 985 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10039415 [exp] 792 / 0 AT5G14870 980 / 0.0 cyclic nucleotide-gated channel 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097600 [exp] 1103 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.018G009200 [exp] 954 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.017G067000 [exp] 808 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.013G108200 [exp] 783 / 0 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.009G010700 [exp] 753 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G106100 [exp] 703 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.015G019100 [exp] 667 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.012G002200 [exp] 665 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.003G183000 [exp] 661 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.014G097900 [exp] 660 / 0 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10019983 pacid=23156154 polypeptide=Lus10019983 locus=Lus10019983.g ID=Lus10019983.BGIv1.0 annot-version=v1.0 ATGGAGTGGAAGAAGGATAAGCTTGTGAGGTTTTATCCAGAGGGTAAACAGCACAAAGGAGGGATTCCATGGGGAAAGAATGATGCAGTTTACCCTGAAG ACCCATCTTCTGTGGCTTCTTCATCTTCATTGCTTATGGCAGGGAGTGGGGTAATGGGAAGCAAAGGTAATAATAAACTCCCTGAAACGTCAAATTTAGG AGGAAGGAAGTCAAAGGTGTTCTCGGAGGACTATCAAGCATGGCACATGAAAATGCTGGATCCTGGGAGTGAAATCGTGTTGAGATGGAACAGGATTTTC CTTGTCTCGTCCTTGTTGGCTCTCTTCATCGATCCGCTCTACTTTTATCTTCCTACCATAGGAGGAGGAGATGGGAAAACTTCGTGTGTTAGTACGGATT TCAAGTTGCGAATTGTTGTTACCTTCTTCAGAACCATTGCAGACCTTTTCTATCTGCTTCATGTGGTTTTGAAGTTCAGGACGGCATATGTTGCTCCAAG CTCTCGTGTTTTTGGAAGGGGGGAACTTGTCATGGATCCTAAACTGATTGGCAGGAGGTATATTCGATCTGACTTCTTCATTGATCTCATTGCCATTCTT CCTCTCCCTCAGATGGTAGTCTGGTTCATCATCCCTGCGACAAGAATGCCTAGAACTGATCATAACAATAATGCACTGGCCCTGATCGTCTTGCTTCAGT ATATCCCCAGGTTATATCTTATCTTTCCGCTGAGCTCCCAAATCATTAAGCATACTGGGTTGGTCACAAGGACAGCTTGGGCAGGGGCTGCTTACAATCT CATATTGTACATGTTGGCAAGCCATGTTTTAGGAGCTGCATGGTATTTACTATCCGTCGAGAGGCATACAACCTGCTGGAAATCAATTTGTGGAAACGAA ACTAGCCCTCTTAAATGCGAGCTTAATTACCTTGACTGCGATGCTTTTAACCACGTGGATCGGAAAGCCTGGGCTAAGAGTACACTTGTTTTCGAAAAGT GTGATCCGAGAAACGATATCGAATTCCAATATGGGTTATTTGAAAATGCTATGAAAAAGAGGGTCGTCTCTACCAGTTTGGTGGACAAGTATTTTTATTG CTTGTGGTGGGGATTACAGCAATTAAGTTCATATGGCCAGAATTTGTCAACAAGCACATTTATTGGAGAGACATCATTTGCAATACTGATTTCCATTGTG GGTCTTGTTCTCTTTGCTCATTTGATTGGCAATATGCAGACATACCTTCAATCTCTTACAGTAAGGCTCGAGGAATGGAGACTGAAGCGAAGAGATACAG AAGAGTGGATGAGACATCGCCAACTCCCCGAAGATCTGAGACAACGTGTTCGACGTTTTGTTCAATACAAATGGGTCGCAACTCGCGGCGTCCTAGAGGA AGATATCCTACGTGGCTTACCTACTGATCTTCGTCGTGACATCCAGCGCCACCTTTGCCTTGACCTCGTCCGACGGGTTCCTTTCTTTTCGCAGATGGAT GATCAGTTGCTTGATGCAATATGCGAGCATCTGGTGTCTTCCCTAAGCACACAAGGCACCTACATTGTCCGGGAAGGTGACCCCGTAACCGAAATGCTGT TCATCATCCGTGGAAGTCTTGAGAGCTCCACCACAAATGGCGGAAGGACGGGTTTCTTCAATACCATCATGCTCAAACCTGGAGACTTCTGCGGAGAGGA GCTTTTAGCCTGGGCTCTGCATCCCAAATCATCTCTCAATCTACCCTCATCGACTAGAACAGTCAGATCGCTGAATGAAGTCGAGGCATTTGCACTCCAA GCTGAGGATCTCAAGTTTGTTGCCAACCAATTCAGACGCCTTCATAGCAAGAAGCTACAGCATACATTTCGGTACCATTCCCATCACTGGAGGACATGGG CAGCCTGCTTTATCCAGGCAGCGTGGCGACGACACAAGAAAAGGGTGGTTGAACATAGTCTCATGATGTCAGAATCGTTTCAGATGGACCGGGATAGGGA AGAGTATGAAGACTCGACTTCGATGGAAGGCGTAGAAAGAAGCTCGAATCCTGCCAAAATGAACCTTGGAGTAACGATACTGGCTTCGAGATTTGCAGCT AACACGAGGAGAGGAGTCCAAAAGATGAAAGATGTGGAAATGCTGAAACTATTGCAGAAGCCTGAGGAGCCTGACTTCTCTGCTGAAGCTGATGACTAG
AA sequence Show only first row Show all	>Lus10019983 pacid=23156154 polypeptide=Lus10019983 locus=Lus10019983.g ID=Lus10019983.BGIv1.0 annot-version=v1.0 MEWKKDKLVRFYPEGKQHKGGIPWGKNDAVYPEDPSSVASSSSLLMAGSGVMGSKGNNKLPETSNLGGRKSKVFSEDYQAWHMKMLDPGSEIVLRWNRIF LVSSLLALFIDPLYFYLPTIGGGDGKTSCVSTDFKLRIVVTFFRTIADLFYLLHVVLKFRTAYVAPSSRVFGRGELVMDPKLIGRRYIRSDFFIDLIAIL PLPQMVVWFIIPATRMPRTDHNNNALALIVLLQYIPRLYLIFPLSSQIIKHTGLVTRTAWAGAAYNLILYMLASHVLGAAWYLLSVERHTTCWKSICGNE TSPLKCELNYLDCDAFNHVDRKAWAKSTLVFEKCDPRNDIEFQYGLFENAMKKRVVSTSLVDKYFYCLWWGLQQLSSYGQNLSTSTFIGETSFAILISIV GLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMRHRQLPEDLRQRVRRFVQYKWVATRGVLEEDILRGLPTDLRRDIQRHLCLDLVRRVPFFSQMD DQLLDAICEHLVSSLSTQGTYIVREGDPVTEMLFIIRGSLESSTTNGGRTGFFNTIMLKPGDFCGEELLAWALHPKSSLNLPSSTRTVRSLNEVEAFALQ AEDLKFVANQFRRLHSKKLQHTFRYHSHHWRTWAACFIQAAWRRHKKRVVEHSLMMSESFQMDRDREEYEDSTSMEGVERSSNPAKMNLGVTILASRFAA NTRRGVQKMKDVEMLKLLQKPEEPDFSAEADD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10019983 [exp]	0	1
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	2.2	0.9520
AT2G21120			Protein of unknown function (D...		Lus10012716 [exp]	3.2	0.9311
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10026166 [exp]	3.7	0.9373
AT1G75510			Transcription initiation facto...		Lus10010631 [exp]	3.7	0.9286
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10005298 [exp]	3.9	0.9358
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	8.1	0.9302
AT3G25910			Protein of unknown function (D...		Lus10043292 [exp]	8.4	0.9245
AT1G80910			Protein of unknown function (D...		Lus10034582 [exp]	8.5	0.9093
AT3G48860			unknown protein		Lus10016721 [exp]	9.5	0.9051
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10032089 [exp]	9.9	0.9194

Compare expression of checked genes

Lus10019983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.