Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57710 877 / 0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 829 / 0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT3G52490 342 / 3e-103 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT2G29970 297 / 2e-85 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT1G07200 296 / 2e-85 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G29920 270 / 7e-76 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57130 265 / 3e-74 Clp amino terminal domain-containing protein (.1) AT2G40130 168 / 3e-44 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G74310 74 / 3e-13 HOT1, ATHSP101 heat shock protein 101 (.1) AT5G50920 64 / 7e-10 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015511 [exp] 1843 / 0 AT5G57710 899 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023201 [exp] 767 / 0 AT5G57710 404 / 1e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008902 [exp] 761 / 0 AT5G57710 392 / 3e-124 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028849 [exp] 240 / 1e-66 AT3G52490 498 / 5e-165 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008970 [exp] 236 / 4e-64 AT3G52490 460 / 1e-147 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021291 [exp] 229 / 2e-62 AT3G52490 690 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038320 [exp] 203 / 2e-53 AT2G29970 696 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10020886 [exp] 201 / 5e-53 AT5G57710 226 / 2e-61 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016966 [exp] 179 / 4e-46 AT3G52490 606 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097300 [exp] 1169 / 0 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G175200 [exp] 1143 / 0 AT5G57710 913 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G140900 [exp] 345 / 1e-102 AT5G57130 751 / 0.0 Clp amino terminal domain-containing protein (.1) Potri.006G204500 [exp] 323 / 7e-96 AT3G52490 852 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G073800 [exp] 325 / 3e-95 AT4G29920 693 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G017600 [exp] 320 / 6e-95 AT3G52490 635 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G071800 [exp] 315 / 6e-93 AT3G52490 785 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G241600 [exp] 275 / 8e-79 AT3G52490 641 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G188200 [exp] 207 / 1e-54 AT1G07200 624 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G252500 [exp] 206 / 2e-54 AT2G29970 668 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019984 pacid=23156250 polypeptide=Lus10019984 locus=Lus10019984.g ID=Lus10019984.BGIv1.0 annot-version=v1.0 ATGAGAGCCGGCCTCACCACGATCCAGCAAACCCTCACCCCAGAGGCAGCCACCGTCTTAAACCACTCAATCGCCGAAGCAGCTCGCCGGAACCATGGCC AGACCACTCCTCTCCATGTCGCCTCAACTCTTCTATCCTCCCCATCGGGATACCTCCGGCAAGCCTGCATCAAATCCCACCCCAATTCTTCACACCCTCT ACAGTGTCGAGCTCTAGAGCTCTGCTTCAGCGTCGCCCTGGAGCGGCTACCCACAGCCCAGAATCTCAACCCGGGACCCGACCCGCCAATTTCCAACGCC TTAATGGCCGCCTTGAAAAGAGCTCAAGCTCATCAGCGGAGAGGATGCCCCGAGCAGCAGCAGCAGCCTCTGTTGGCGGTTAAAGTGGAGCTTGAGCAGC TGATTATCTCGATTCTCGATGACCCGAGTGTGAGTCGGGTCATGAGAGAAGCTAGCTTCTCCAGTCCGGCTGTTAAGGCCACAATTGAACAGTCTTTGAA TTCTCCGCAGCCCCCACCGGCCTCGAATTCCGGTCCGATTGGGATGGGGAATCGGAATATGTATATGAATCCTAGATTAGCAGGTGGCGGGTCGGATGAG GTGAAGCGGGTGGTGGAGATTTTGGTTCGGGGCGGGAAGAAGAGGAATCCGGTTTTGGTTGGGGAATCGGAACCCGAAATGGTGGTGAAGGAAGCGTTGA GGAAGATTGCAGAGAGTAAGGAGATAATTGGGGATGTTGAAGTGATTCATCTGGAGAAGGAGTTTGCTGGCGATAATAGGCAGAGGATCGTTTCGAAGAT TGTGGAGTTGGGAGGATTGGTTGAGACCCGGTTAGCGGCGGGGAATTCGAGTAGTGGGTTGGTTCTCGATTTGGGTGACTTGAAATGGCTGGTGGAGCAG AAGATGGGGTCGGAGTTGGGGAAAGTTGCGGTGGCGGAGATGGGGAAGTTAGTCGGGAAGTTTAGAGAAGGGAGAAAGATTTGGTTGATCGGAACAGCTA CTTGTGAGACGTATTTGAGGTGTCAAGTTTATCATCCAACAATGGAGAATGACTGGGATTTGCAGGCTCTTCCTATTGCTAACAGAGCTCCTCTTCCTGG AATCTTCCCTAGACTTGGGACGACTGGATTCATGGGCAACTCTTTTGAGTCATTGTCATCATCACCATTGATGAAGAGCTTTCCAACGGTGGTGCCAATT GCTCCACGGAAACAGCTACCTGATAATACGGATCCTGCCCGGAAAACAAACTTGTGCAATCAGTGCAGTCAAAACTATGAGCAAGAACTGGCAAGGCATG TCCCCAAGAATCTTGAGAAACCTTCCACGGCCGACGTTGAAGCTACTAATCAGCAGTCTTTGCCTCCTTGGATGAAGAATGCCACGACGAATGATCAGAC TGCGACCACTAAGGATCAAGAATTGATACAGAAGCAGAAGACTATGGCATTGCAAAGGAAATGGAATGATAAATGCTTGCGACTTCATCCCGGCCATCAT CGATCGAATCATGGCTCCGAGAGGATAACTCAGCCTCTTGCTATCTCAATGCCAGGCTTGTACAATCAGAAGACCCTGGTGCCTTGTGTGCCAAGAATAA GCTTGACTGGTAATAACCTCCCTGGAACCCTGCAGTTAAATACAAATCTGTTGGCTAAACAGAGCCCTAGAAAGGCAACTAGTCCACCTGGAAGCCCTGT GAGGACAGAGCTTGTTCTTGGTCGTCCTAAGCTTGCAGCCGAAGCCATTACTCCTAAGGATAACAAAAATGTTACAGCTGCTCCCGATTCGCAAGCAAAG ATGCACGAATTCCAGATCAGCAAACTGCTTGACAAATTGGACGCCGATTCCTATAAGAAATTGCTAAAGGGACTTATGGAGAAAGTGTGGTGGCAGCAAG ATGCAGCATCTGCAGTGGCTACAGTGATGACACAGTGCAAATTGGGTAACGGAAAACGGAGAGGAAATGCATCCAAAGGTGATATTTGGTTATTGTTCAC TGGTCCTGACAGGATAGGGAAAAAGAAGATGGCAGTTGCTTTATCTGAGCTGGTTCGCCAGTCAAATCCGGTAACAGTTCATCTTGGTTCACGTCGTAAC GATGGAGGAGACTCTGAGGTGAGCTTTCGTGGTAAAACTGTCATGGATCGGATTGTGGAGGCAGTTAGGAGGAACCCATTTTCGGTAGTGGTGCTTGAGG ACATTGACGAAGCTGATATGCTAGTCAAAGGGAGTATAAAACGAGCGATGGAAAGGGGTCGACTTGCTGATTCCCATGGCCGTGAAATCAGCCTTGGCAA TGTCATCTTCATACTCACCGCAAGTTGGTTACCGAACAGCGGTGATTTCGTATCTCACGGCTATGCACTTGATGAAAAGAAGCTTGCGAATTTCGTCAGC GGCGGTTGGCAGCTAAGGCTATCCATTAATGGGAAAACAGCAAAGCGCCGAGCAAGTTGGCTTGACGAAGAAGATAGGGCTACGAAGCCGAGGAAGGATA TAGGATCAGCTGGATTAACATTCGACCTCAACGAGGAAGCTGCTGAGATTGAGCAAGTTGGTTCGCGAAATTCAAGCGATGTTACAGTTGATCATGAAGA TGAGCATTTCTTCAGTAGCAGACTACTAACACCAGCTACTACGACATCACTGCCTTCAGAGCTGCTCGATTTGTTGGACGATAGTGTAGTCTTCAAACCT GTAGATTTCGGTGCAATCAGAAGAGACATTTTGAATTCCATCACAGATCGTGCTTCGTCTATCATTGGCGATGGGAACAACTTGGAACTCCAAGTGGATG CCCTGGAGAAAATTGCAGGTGGGTTGTGTTTAGGGTACACTGGGTTAGAAGAATGGACAGAGAAAGTATTGGTCCCTAGCTTAAGGCAAGTAAGGATGAG GCTGACTGCAGATCAATCTATGGTAGTCCGGTTGGAACCGGATAGCGAATCGGATAACCGGGGACCGGGAGATTGGCTACCAAGTAGCATCAGAGTGATG GTTGATGGTAGATTCTAA
AA sequence Show only first row Show all	>Lus10019984 pacid=23156250 polypeptide=Lus10019984 locus=Lus10019984.g ID=Lus10019984.BGIv1.0 annot-version=v1.0 MRAGLTTIQQTLTPEAATVLNHSIAEAARRNHGQTTPLHVASTLLSSPSGYLRQACIKSHPNSSHPLQCRALELCFSVALERLPTAQNLNPGPDPPISNA LMAALKRAQAHQRRGCPEQQQQPLLAVKVELEQLIISILDDPSVSRVMREASFSSPAVKATIEQSLNSPQPPPASNSGPIGMGNRNMYMNPRLAGGGSDE VKRVVEILVRGGKKRNPVLVGESEPEMVVKEALRKIAESKEIIGDVEVIHLEKEFAGDNRQRIVSKIVELGGLVETRLAAGNSSSGLVLDLGDLKWLVEQ KMGSELGKVAVAEMGKLVGKFREGRKIWLIGTATCETYLRCQVYHPTMENDWDLQALPIANRAPLPGIFPRLGTTGFMGNSFESLSSSPLMKSFPTVVPI APRKQLPDNTDPARKTNLCNQCSQNYEQELARHVPKNLEKPSTADVEATNQQSLPPWMKNATTNDQTATTKDQELIQKQKTMALQRKWNDKCLRLHPGHH RSNHGSERITQPLAISMPGLYNQKTLVPCVPRISLTGNNLPGTLQLNTNLLAKQSPRKATSPPGSPVRTELVLGRPKLAAEAITPKDNKNVTAAPDSQAK MHEFQISKLLDKLDADSYKKLLKGLMEKVWWQQDAASAVATVMTQCKLGNGKRRGNASKGDIWLLFTGPDRIGKKKMAVALSELVRQSNPVTVHLGSRRN DGGDSEVSFRGKTVMDRIVEAVRRNPFSVVVLEDIDEADMLVKGSIKRAMERGRLADSHGREISLGNVIFILTASWLPNSGDFVSHGYALDEKKLANFVS GGWQLRLSINGKTAKRRASWLDEEDRATKPRKDIGSAGLTFDLNEEAAEIEQVGSRNSSDVTVDHEDEHFFSSRLLTPATTTSLPSELLDLLDDSVVFKP VDFGAIRRDILNSITDRASSIIGDGNNLELQVDALEKIAGGLCLGYTGLEEWTEKVLVPSLRQVRMRLTADQSMVVRLEPDSESDNRGPGDWLPSSIRVM VDGRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57710			Double Clp-N motif-containing ...		Lus10019984 [exp]	0	1
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10026510 [exp]	2.0	0.8531
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10037996 [exp]	5.1	0.8485
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10031039 [exp]	6.0	0.8192
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10034132 [exp]	6.2	0.8426
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10023644 [exp]	8.9	0.8217
AT2G38185			RING/U-box superfamily protein...		Lus10004813 [exp]	10.0	0.8187
AT4G21210		ATRP1	PPDK regulatory protein (.1.2)		Lus10006758 [exp]	16.6	0.8179
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040790 [exp]	18.4	0.8079
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10021967 [exp]	19.0	0.8055
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10015118 [exp]	20.3	0.8070

Compare expression of checked genes

Lus10019984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.