Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57685 64 / 2e-13 LSB1, ATGDU3 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) AT4G25760 59 / 1e-11 ATGDU2 glutamine dumper 2 (.1) AT5G24920 55 / 6e-10 ATGDU5 glutamine dumper 5 (.1) AT2G24762 47 / 9e-07 ATGDU4 glutamine dumper 4 (.1) AT4G31730 45 / 3e-06 ATGDU1, GDU1 glutamine dumper 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019986 [exp] 245 / 8e-84 AT5G57685 125 / 7e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10015513 [exp] 226 / 4e-76 AT5G57685 124 / 2e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10008910 [exp] 104 / 3e-28 AT5G57685 125 / 6e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10006986 [exp] 103 / 7e-28 AT5G57685 124 / 2e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10006987 [exp] 81 / 3e-19 AT5G57685 125 / 2e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10026911 [exp] 52 / 2e-08 AT4G31730 125 / 6e-37 glutamine dumper 1 (.1) Lus10020107 [exp] 49 / 3e-07 AT4G31730 122 / 1e-35 glutamine dumper 1 (.1) Lus10008909 [exp] 39 / 0.0002 AT5G57685 87 / 2e-23 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G173901 [exp] 84 / 2e-20 AT5G57685 89 / 8e-23 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Potri.018G013600 [exp] 60 / 1e-11 AT4G25760 79 / 2e-19 glutamine dumper 2 (.1) Potri.006G267900 [exp] 59 / 5e-11 AT5G57685 83 / 2e-20 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019985 pacid=23156215 polypeptide=Lus10019985 locus=Lus10019985.g ID=Lus10019985.BGIv1.0 annot-version=v1.0 ATGGCCTCCGGTAGAGAACCCTTTAACATGACACCCCGACCAGCCGCTTCCGCCGTCGGAGGAGGAGTAGAACGCTCGCCGTGGCATTCCCCTGTTCCTT ACCTCTTCGGGGGACTGGCCGCCATGTTGGGACTCATCGCCTTCGCGCTCTTGATCCTAGCTTGTTCCTACTGGAAACTCTCCGGCTACCTCGACGGTGC AGAAAGAGATTTGGAATCCGGTGAAGGCGGCGGCGGCGATGAGAAGAATGGAGAGAAGAAAAAGGTTGCGGCAGAGGAGGAGTACGAGGAGAAAGTTTTG GTGATTATGGCTGGGCAATTGAACCCCACTTTCCTCGCTACTCCGGTCTCCAGCCGGTCATCGTCGTTCGAGAAGACTTGCTCTTGTAATGAGAAATTGG AGGTGGTTGAAAAACAGGGCAACGAAGGACAGAGGGAAAACAGGGGAAGTGAAGAACAGAGTGAGAACAGAGGAAGTAGTTCAACAAGAACGCCGGCGGT AGAGGGGTTGCTTGTGGAGGGTAATACAACGGCGTCGCATTGA
AA sequence Show only first row Show all	>Lus10019985 pacid=23156215 polypeptide=Lus10019985 locus=Lus10019985.g ID=Lus10019985.BGIv1.0 annot-version=v1.0 MASGREPFNMTPRPAASAVGGGVERSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYLDGAERDLESGEGGGGDEKNGEKKKVAAEEEYEEKVL VIMAGQLNPTFLATPVSSRSSSFEKTCSCNEKLEVVEKQGNEGQRENRGSEEQSENRGSSSTRTPAVEGLLVEGNTTASH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019985 [exp]	0	1
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019986 [exp]	1.0	0.9549
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10007346 [exp]	2.4	0.8071
AT5G15240			Transmembrane amino acid trans...		Lus10012824 [exp]	6.3	0.7768
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006572 [exp]	10.0	0.7734
AT2G27500			Glycosyl hydrolase superfamily...		Lus10004869 [exp]	10.7	0.7706
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10022786 [exp]	11.0	0.7588
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030454 [exp]	13.0	0.7695
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011859 [exp]	14.1	0.7109
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10025774 [exp]	14.3	0.7902
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Lus10000719 [exp]	15.2	0.7675

Compare expression of checked genes

Lus10019985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.