Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57685 66 / 5e-14 LSB1, ATGDU3 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) AT4G25760 60 / 1e-11 ATGDU2 glutamine dumper 2 (.1) AT5G24920 52 / 7e-09 ATGDU5 glutamine dumper 5 (.1) AT2G24762 47 / 1e-06 ATGDU4 glutamine dumper 4 (.1) AT4G31730 45 / 3e-06 ATGDU1, GDU1 glutamine dumper 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019985 [exp] 245 / 7e-84 AT5G57685 123 / 3e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10015513 [exp] 236 / 4e-80 AT5G57685 124 / 2e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10006986 [exp] 105 / 1e-28 AT5G57685 124 / 2e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10008910 [exp] 103 / 1e-27 AT5G57685 125 / 6e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10006987 [exp] 80 / 4e-19 AT5G57685 125 / 2e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10026911 [exp] 52 / 2e-08 AT4G31730 125 / 6e-37 glutamine dumper 1 (.1) Lus10020107 [exp] 48 / 4e-07 AT4G31730 122 / 1e-35 glutamine dumper 1 (.1) Lus10008909 [exp] 40 / 0.0001 AT5G57685 87 / 2e-23 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G173901 [exp] 87 / 1e-21 AT5G57685 89 / 8e-23 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Potri.018G013600 [exp] 61 / 1e-11 AT4G25760 79 / 2e-19 glutamine dumper 2 (.1) Potri.006G267900 [exp] 59 / 5e-11 AT5G57685 83 / 2e-20 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019986 pacid=23156173 polypeptide=Lus10019986 locus=Lus10019986.g ID=Lus10019986.BGIv1.0 annot-version=v1.0 ATGGCCTCCGGTAGAGAACCCTTTAACATGACACCCCGACCAGCCGCTTCCGCCGTCGGCGGAGGAGTAGAACGCTCGCCGTGGCATTCCCCTGTTCCTT ACCTCTTCGGGGGACTGGCCGCCATGTTGGGACTCATCGCCTTCGCGCTCTTGATCCTAGCTTGTTCCTACTGGAAACTCTCCGGCTACCTCGACGGTGC AGAAAGAGATTTGGAATCCGGTGAAGGCGGCGGCGGCGATGAGAAGAATGGAGAGAAGAAAAAGGTTGCGGCAGAGGAGGAGTACGAGGAGAAAGTTTTG GTGATTATGGCTGGACAATTGAACCCCACTTTCCTCGCTACTCCGGTCTCCAGCCGGTCATCGTCGTTCGAGAAGACTTGCTCTTGTAATGAGAAATTGG TTGAGGTTGAAAAACAGGGCAACGAAGAACAGAGTGAAAACAGGGGAAGTGAAGAACAGAGTGAGAACAGAGGAAGTAGTTCAACAAGAACGCCGGCGGT AGAGGGGTTGCTTGTGGAGGGTAATACAACGGCGTCGCATTGA
AA sequence Show only first row Show all	>Lus10019986 pacid=23156173 polypeptide=Lus10019986 locus=Lus10019986.g ID=Lus10019986.BGIv1.0 annot-version=v1.0 MASGREPFNMTPRPAASAVGGGVERSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYLDGAERDLESGEGGGGDEKNGEKKKVAAEEEYEEKVL VIMAGQLNPTFLATPVSSRSSSFEKTCSCNEKLVEVEKQGNEEQSENRGSEEQSENRGSSSTRTPAVEGLLVEGNTTASH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019986 [exp]	0	1
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019985 [exp]	1.0	0.9549
AT2G01818			PLATZ transcription factor fam...		Lus10003680 [exp]	2.8	0.8438
AT2G27500			Glycosyl hydrolase superfamily...		Lus10004869 [exp]	3.9	0.8072
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10007346 [exp]	4.9	0.8054
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030454 [exp]	7.5	0.8053
AT5G15240			Transmembrane amino acid trans...		Lus10012824 [exp]	10.6	0.7837
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039426 [exp]	12.0	0.7472
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Lus10000719 [exp]	12.0	0.7968
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Lus10036772 [exp]	13.0	0.8388
					Lus10025748 [exp]	14.8	0.7961

Compare expression of checked genes

Lus10019986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.