Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52540 347 / 5e-118 Protein kinase superfamily protein (.1) AT3G15890 332 / 7e-112 Protein kinase superfamily protein (.1) AT1G70460 293 / 8e-93 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT5G38560 289 / 3e-91 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G68690 288 / 7e-91 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G26150 288 / 4e-90 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT3G24550 285 / 5e-90 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT4G34440 284 / 1e-89 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT3G24540 280 / 1e-89 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G10620 280 / 1e-87 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001323 [exp] 663 / 0 AT1G52540 353 / 3e-120 Protein kinase superfamily protein (.1) Lus10006985 [exp] 651 / 0 AT1G52540 348 / 8e-119 Protein kinase superfamily protein (.1) Lus10011490 [exp] 439 / 3e-154 AT3G15890 466 / 2e-165 Protein kinase superfamily protein (.1) Lus10031673 [exp] 434 / 9e-152 AT1G52540 338 / 1e-114 Protein kinase superfamily protein (.1) Lus10023130 [exp] 420 / 2e-146 AT1G52540 473 / 3e-168 Protein kinase superfamily protein (.1) Lus10035071 [exp] 293 / 2e-93 AT1G68690 570 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10017898 [exp] 293 / 3e-92 AT1G68690 631 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10011098 [exp] 285 / 3e-90 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10029151 [exp] 279 / 3e-90 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G173800 [exp] 621 / 0 AT1G52540 344 / 4e-117 Protein kinase superfamily protein (.1) Potri.003G032100 [exp] 453 / 2e-159 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.015G134500 [exp] 444 / 1e-155 AT1G52540 335 / 2e-113 Protein kinase superfamily protein (.1) Potri.012G132200 [exp] 435 / 9e-153 AT1G52540 335 / 3e-114 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 435 / 2e-152 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 295 / 3e-93 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 280 / 3e-91 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 290 / 4e-91 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 290 / 5e-91 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 285 / 4e-90 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019988 pacid=23156131 polypeptide=Lus10019988 locus=Lus10019988.g ID=Lus10019988.BGIv1.0 annot-version=v1.0 ATGGGAGCAGGCTCTAGTTGTTGCGCCGAAACCGGGATCGATCAAGGAGCACTGACGGCCACCGCTGCGTTGGCGGTGAGCAATACGTCGTGGAGGATCT TCAGTTACAAGGAGCTTCACATCGCCACTAATGGGTTTAGTGAGGACAACAAGTTGGGGGAAGGTGGCTTTGGTAGTGTCTATTGGGGCAAAACTAACGA CGGAATTCAGATTGCGGTGAAGAAGTTGAAGGCGATGAACTCAAAGGCGGAGATGGAGTTTGCGGTGGAAGTGGAAGTACTTGGAAGGGTACGCCACAAG AACTTGCTCGGGCTCAGAGGATACTGCGCCGGCACCGACCAACGGCTCATAGTTTATGATTACATGCCTAACCTCAGCCTTCTATCTCACCTTCATGGCC AATTCGCTACCCAAGTTCAGCTCGATTGGAAGCGACGTGTCAAGGTAGTCATTGGTTCCGCCGAAGGCCTTTTATATTTGCACCACGAGGTGACACCCCA TATCATCCACAGGGACATAAAGGCTAGTAACGTTCTACTCGACTCAAATTTCGAGCCGTTGGTTGCTGATTTCGGGTTCGCTAAGTTGATTCCGGAAGGT GTAAGCCACATGACGACCCGTGTCAAGGGTACTTTAGGATACCTAGCTCCCGAGTACGCCATGTGGGGGAAAGTCTCAGAGAGTTGCGATGTTTATAGCT TTGGGATTCTGTTGTTGGAACTTGTTACGGGCAGAAAACCCATTGAGAAGTTACCCGGTGGAGTTAAACGAACCATTACCGAATGGGCTGAGCCCTACAT AGTCCAAGGAAAGTTCAAGGACCTTGCAGACCCAAAGCTTCGTGGGAACTTCGATGAGAACCAATTCAAGCAGGCCATATACGTGGCAGCATTGTGTGTG CAGAACGAGCCTGAGAAACGGCCCAATATGATGCAAGTGGTGAAGATGTTGAAGAATCATGATCCGATGAGGAGTAAATCGCTCCATACCAGAATGCAGA GTATTACGTATAGCGAAGATTTGATGGCGATAGAGCAGTGCGACGAGGAGGAGGAAGATGGTAATCGCAGTGGAGGACGTGACAAAGGAGGAAATCACGG AGGTGGGCTTCCGGAGGAGAGTGGGTATGGGGTGTTTAGTGCATTGGAGTTGCCCAAAATGCAAGACCCATACAAACGTCATGGAAACAATAATAGGAGA TTTGCATAA
AA sequence Show only first row Show all	>Lus10019988 pacid=23156131 polypeptide=Lus10019988 locus=Lus10019988.g ID=Lus10019988.BGIv1.0 annot-version=v1.0 MGAGSSCCAETGIDQGALTATAALAVSNTSWRIFSYKELHIATNGFSEDNKLGEGGFGSVYWGKTNDGIQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHK NLLGLRGYCAGTDQRLIVYDYMPNLSLLSHLHGQFATQVQLDWKRRVKVVIGSAEGLLYLHHEVTPHIIHRDIKASNVLLDSNFEPLVADFGFAKLIPEG VSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGVKRTITEWAEPYIVQGKFKDLADPKLRGNFDENQFKQAIYVAALCV QNEPEKRPNMMQVVKMLKNHDPMRSKSLHTRMQSITYSEDLMAIEQCDEEEEDGNRSGGRDKGGNHGGGLPEESGYGVFSALELPKMQDPYKRHGNNNRR FA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52540			Protein kinase superfamily pro...		Lus10019988 [exp]	0	1
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10006720 [exp]	2.4	0.6727
AT1G01490			Heavy metal transport/detoxifi...		Lus10024672 [exp]	12.5	0.6712
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10042315 [exp]	25.8	0.6502
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021203 [exp]	34.1	0.6481
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10031239 [exp]	40.2	0.6255
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10041179 [exp]	42.4	0.6499
AT1G75450		ATCKX6, ATCKX5,...	CYTOKININ OXIDASE 6, ARABIDOPS...		Lus10024289 [exp]	63.4	0.6190
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10029847 [exp]	77.1	0.5691
					Lus10010256 [exp]	102.4	0.5883
AT4G03220			Protein with RNI-like/FBD-like...		Lus10027258 [exp]	141.3	0.5175

Compare expression of checked genes

Lus10019988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.