Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15550 359 / 2e-119 IAGLU indole-3-acetate beta-D-glucosyltransferase (.1) AT1G05560 348 / 2e-115 UGT75B1, UGT1 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) AT1G05530 330 / 2e-108 UGT75B2, UGT2 UDP-GLUCOSYL TRANSFERASE 2, UDP-glucosyl transferase 75B2 (.1) AT4G14090 321 / 1e-104 UDP-Glycosyltransferase superfamily protein (.1) AT2G43820 244 / 3e-75 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT3G21560 244 / 1e-74 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT2G31790 242 / 2e-74 UDP-Glycosyltransferase superfamily protein (.1) AT1G05675 235 / 1e-71 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 230 / 7e-70 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G24100 227 / 1e-68 UGT74B1 UDP-glucosyl transferase 74B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015515 [exp] 848 / 0 AT4G15550 379 / 3e-127 indole-3-acetate beta-D-glucosyltransferase (.1) Lus10021610 [exp] 574 / 0 AT1G05560 372 / 6e-125 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) Lus10040591 [exp] 279 / 6e-92 AT4G14090 185 / 1e-56 UDP-Glycosyltransferase superfamily protein (.1) Lus10008742 [exp] 265 / 8e-83 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10009412 [exp] 254 / 5e-79 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020556 [exp] 238 / 1e-72 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10010712 [exp] 238 / 1e-72 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1) Lus10039041 [exp] 236 / 6e-72 AT1G05675 343 / 3e-114 UDP-Glycosyltransferase superfamily protein (.1) Lus10006352 [exp] 229 / 3e-69 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G236400 [exp] 408 / 2e-138 AT1G05560 442 / 1e-152 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) Potri.014G146000 [exp] 405 / 2e-137 AT4G15550 429 / 2e-147 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.002G236500 [exp] 404 / 7e-137 AT4G15550 436 / 3e-150 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.006G055600 [exp] 370 / 1e-123 AT4G15550 442 / 2e-152 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.016G052500 [exp] 364 / 2e-121 AT4G15550 419 / 3e-143 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.004G083700 [exp] 310 / 9e-100 AT4G14090 374 / 3e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G101800 [exp] 302 / 2e-97 AT4G14090 369 / 3e-124 UDP-Glycosyltransferase superfamily protein (.1) Potri.015G071900 [exp] 259 / 9e-81 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.009G095500 [exp] 246 / 1e-75 AT2G23260 421 / 2e-144 UDP-glucosyl transferase 84B1 (.1) Potri.007G140500 [exp] 243 / 1e-74 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10019989 pacid=23156116 polypeptide=Lus10019989 locus=Lus10019989.g ID=Lus10019989.BGIv1.0 annot-version=v1.0 ATGGCCGCGGCTGTAACGAAAGAACAACGAGGACCACACATCGTGGTCGTAACATTCGCAGCACACGGCCATCTAAATCCGACCCTTCATTTCTCCGAAC GCTTGCTACTCCTTGGTTCCCGCGTCACCCTCGTCACCACTATTTCCGGCCACTCCCTTCTTACCAACAAAAAAAGGTCCTTACCCGATGGCCTCTCGAT AGCCACGTTCTCCGACGGTTACGACATCCCCGGGTCGCATAAAAAATCCAAGGATGATCAGAGCAAGCAGTGGGTCCAGATGAGCACCCGTGGGGCCGAA TTCCTAAACGAGTTTATCGCTACTAATTCCAAGGAGGAAACCCCGGTCTGTTGCTTGGTGTACACGCTACTGCTGACGTGGGTTGCTGATGTGGCGCGGG ACAACACCCTCCCCTCGGTACTTCTCTGGATCCAACCGGCTACCGTCTTCGACATCTATTACTATCTCACCAATGGCTTCGAGGAGGCTTTTGAGAAATG CAAGGATCCGTCTTTCGAGTTAGAGTTGCCTGGGATTCCGGTGAGCTTCACTAATGACGAACTTCCTTCTTTCGCCTCTCCTTCCAACCCGCATCCTTTC TTGCGCCACGCAATGATAGAACAAGTCAAAGTGTTGACCCGGGACAATGGGAAGTCAAAAGTCTTGGTCAACACTTTTGATGAGTTGGAATTGAAAGCCA TAAATGCTTCAGATGTGAAACTCGAAATGATTGGAGTGGGCCCTTTGATTCCATCCACTTTAGTCAATAGGGTCCAGTACTCCATTGTTAAAGTTAGCAA TGGAGTATTTGGGATCAACACGGTCCAAGAGGATAAGGAGAAGGATTGTACTCTGACTTGGCTGGACACGCAAGCCACATCATCAGTCGTTTTTGTCTCG TTTGGGACTATGGCGGTGATATCAAGGAAGCAGAAGGAGGAAATCGGGAAGGCGTTACTGTGCAACAATAGACCATTCTTGTGGGTAATAAGAAAAGACG AGTACGAAAAAGAAGAGGAATTAGAAGAAGATAGGATGGAACTGGTGCGATGGAGAGAGGACATAGAGACAAAGGTAACTGCGGTTGGTGGGAAAATAGT TGAGTGGTGCTCGCAAGTGGACGTGCTTGCACATGAAGCAATAGGATGTTTTGTGACACATTGTGGGTGGAACTCAACGCTAGAGGGGATGTGTTTGGGT GTACCACTAGTGGCTTTCCCTCAATTTTCCGACCAAACGACAAATGCAAAGTTGGTTGAGGACATGTGGAAGATAGGGGTGCGGGTGGTGGTGGGACGAG AGAAACCCGTTGCCTCCGATGAATCGGAGGAGGAGGTTACGATTAGTACGGTGGTGGAGGGAGATGAGATAAGGAGATGTTTGGATTTGGTGATGGGAGA AGGTCAAGTTAGGGAACAAGTTAGGAGGAATGCAAATAAGTGGAAGCAGCTTGCCATGGATGCGCTGCGGGAGGGTGGCTCCTCGGAATCCAATCTCCAA GCTTTTGTCAACGAATTTACTGGTAAATGA
AA sequence Show only first row Show all	>Lus10019989 pacid=23156116 polypeptide=Lus10019989 locus=Lus10019989.g ID=Lus10019989.BGIv1.0 annot-version=v1.0 MAAAVTKEQRGPHIVVVTFAAHGHLNPTLHFSERLLLLGSRVTLVTTISGHSLLTNKKRSLPDGLSIATFSDGYDIPGSHKKSKDDQSKQWVQMSTRGAE FLNEFIATNSKEETPVCCLVYTLLLTWVADVARDNTLPSVLLWIQPATVFDIYYYLTNGFEEAFEKCKDPSFELELPGIPVSFTNDELPSFASPSNPHPF LRHAMIEQVKVLTRDNGKSKVLVNTFDELELKAINASDVKLEMIGVGPLIPSTLVNRVQYSIVKVSNGVFGINTVQEDKEKDCTLTWLDTQATSSVVFVS FGTMAVISRKQKEEIGKALLCNNRPFLWVIRKDEYEKEEELEEDRMELVRWREDIETKVTAVGGKIVEWCSQVDVLAHEAIGCFVTHCGWNSTLEGMCLG VPLVAFPQFSDQTTNAKLVEDMWKIGVRVVVGREKPVASDESEEEVTISTVVEGDEIRRCLDLVMGEGQVREQVRRNANKWKQLAMDALREGGSSESNLQ AFVNEFTGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10019989 [exp]	0	1
AT1G11655			unknown protein		Lus10002065 [exp]	1.4	0.9565
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	2.2	0.9565
AT1G13480			Protein of unknown function (D...		Lus10031913 [exp]	3.6	0.9287
AT1G51340			MATE efflux family protein (.1...		Lus10026303 [exp]	4.0	0.9534
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	4.2	0.9553
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10014831 [exp]	4.5	0.9406
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10010874 [exp]	6.4	0.8975
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10029453 [exp]	6.5	0.9111
AT1G59171			Inositol-pentakisphosphate 2-k...		Lus10033202 [exp]	7.9	0.9025
AT5G50760			SAUR-like auxin-responsive pro...		Lus10003140 [exp]	9.2	0.9354

Compare expression of checked genes

Lus10019989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.