Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57670 607 / 0 Protein kinase superfamily protein (.2) AT2G18890 371 / 2e-123 Protein kinase superfamily protein (.1.2) AT5G65530 340 / 1e-110 Protein kinase superfamily protein (.1) AT3G05140 338 / 1e-109 RBK2 ROP binding protein kinases 2 (.1) AT5G10520 329 / 2e-106 RBK1 ROP binding protein kinases 1 (.1) AT5G35960 321 / 1e-103 Protein kinase family protein (.1) AT5G18910 322 / 3e-103 Protein kinase superfamily protein (.1) AT2G16750 278 / 5e-85 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 267 / 1e-82 Protein kinase superfamily protein (.1.2.3) AT1G77280 246 / 1e-71 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015516 [exp] 987 / 0 AT5G57670 515 / 1e-177 Protein kinase superfamily protein (.2) Lus10006957 [exp] 377 / 2e-126 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10035949 [exp] 338 / 2e-109 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10008192 [exp] 328 / 4e-106 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10018959 [exp] 322 / 5e-103 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10012727 [exp] 322 / 5e-102 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10012776 [exp] 322 / 2e-101 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10034000 [exp] 321 / 8e-101 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10025713 [exp] 285 / 7e-90 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G173700 [exp] 791 / 0 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.018G096100 [exp] 785 / 0 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.018G091200 [exp] 389 / 1e-130 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.006G166600 [exp] 389 / 1e-130 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.013G028100 [exp] 347 / 7e-113 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.007G011700 [exp] 335 / 2e-108 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.014G136300 [exp] 333 / 2e-108 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.010G027301 [exp] 325 / 2e-103 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.005G067000 [exp] 270 / 4e-81 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G102400 [exp] 269 / 2e-80 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019990 pacid=23156171 polypeptide=Lus10019990 locus=Lus10019990.g ID=Lus10019990.BGIv1.0 annot-version=v1.0 ATGATCCCTCCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAAGATACTGATAGGCATTCCGTTAGACCCGGATGAGAGCAATGAGCTTCTGTCGT GGGCGATTCGAGTTCTTGCTGCTCCAAATGACACCATTGTTGCTATCCATGTTGTTGTCGAGGAGGAGGAGGAGGAATCCAAGAAGAAGAAGAACAAGAA GAAGGGAAGTAAGAGGGTGCAATCTCGAATTCGACAAGGGAAAGCACATGTTATTTCTGTTCTTGGAGAGTATGCTTGGACTTGCCAATCTAAGGAGATA AATCTTGAAGCTAGAGTTGGGTTCAGTTCAAGTATTCAAGCTGGTCTAGTTCATGAATCCAAGTCCATTTCAGCTGACTACCTTGTTCTTCCCGGGTTAC GAAACAAGTCAAACAGGACTTGGCATGAGGTCATCAAGTTTTGTTTTGAGCATGCTCCTGAAGGATGTTCAGTCATCTCAATTGGCAAGTCTCAACAACC ACCACCTTCACCACTACCAAAGAGGAACTCTGCTCTCCTCAAAGAAGTTCATCAATCAAATTCAGAGTGGTTGAGGAATGGAAAAGATGACAGCATGGAA AATGGTTCACCTAGGACTGTGTTGGATGAACTTGAAGGAGAATCATCATGTAACAGTACCACTGAAGACGAGATTACCAGCATTTCCGATTCGACAGTCA CAGGAACAGAATCGCCGATTTCTAAGGTGATTCACCACCAATCAAAGTCCAAAAGACAAATGTCTCCCTACAAGTTCATCAGCTCATTCTTAACTTCACC TCTAAGAAAAAGAACTTACAGCTTCTCTGGTAAACCTAAGCAACAAGTACAGCAGCAGCAGCATCATCCAAATCCGCAGCAGGCTTTGTTGAAGTGCTTT AGCTACAACGAAATCGCCAGAGCCACCAACGATTTCGATCCAGGTTACATTGTTGGGAGAGGAGGTTATTCAGAAGTATATAGAGGTGATCTTTGTGATG GAAGAGCCATTGCAGTGAAAAGGCTAGCTAAGGACAACAAAGATGCTAACAAGGAGAAAGAGTTCCTCACTGAGTTAGGCATTCTTGGACATGTATGTCA TCCCAACACAGCCACTTTAGTAGGCTGCTGCATTGAGAATGGACTTTACTTAGTTTTTAGCTTCTCACAGAATGGAAACTTGTCATCAGCATTGCATGGG GATTTGAAAGGTGAGGTGCTTGATTGGGAGACAAGGTACAGAATTGTTCTTGGAGTTGCAAGAGGCCTGCATTACCTTCATAAATGCTGCAAACGTCGCA TAATCCACCGTGACATCAAGGCCTCAAATGTACTCCTTGGACCTGACTATGAGCCCCAGATAACTGATTTTGGGCTGGCAAAATGGCTTCCAAATAAATG GACACACCATGCTGTAATCCCAATTGAAGGAACATTTGGATACTTAGCTCCAGAGTACTTCATGCATGGGATTGTGGATGAGAAAACAGATGTATTTGCC TTTGGAGTTCTGCTCCTTGAGATAATCTCTGGAAGAAGGCCTGTTGATTCTTCAATGCAGAACCTTCTCTTATGGGCAAAGCCACTGATGGAATCAGGGA ATGTTGCTGAACTTGCCGACTCGAAACTCGAAGGGAGATTCGACGAATATCAGATGCACAGAGTTGTGCTGACAGCTTCATACTGTGTTAGACAGTCTGC AGCATGGAGACCATCAATGAGTGAGGTGTTGGAGCTTTTAACCTCAGCAGGTCAAGATTCTGAAGCTTTGTCAACAAAGAGCGGTAGGATACCGAAGTTT ACATCTGATGAGCTGGATGATTTCTCCATGGTTTATGGGTATGATTTCCCCATTGATATAGACTTGGAAGAGTATTTGTAA
AA sequence Show only first row Show all	>Lus10019990 pacid=23156171 polypeptide=Lus10019990 locus=Lus10019990.g ID=Lus10019990.BGIv1.0 annot-version=v1.0 MIPPSPSSSSSSSSSKILIGIPLDPDESNELLSWAIRVLAAPNDTIVAIHVVVEEEEEESKKKKNKKKGSKRVQSRIRQGKAHVISVLGEYAWTCQSKEI NLEARVGFSSSIQAGLVHESKSISADYLVLPGLRNKSNRTWHEVIKFCFEHAPEGCSVISIGKSQQPPPSPLPKRNSALLKEVHQSNSEWLRNGKDDSME NGSPRTVLDELEGESSCNSTTEDEITSISDSTVTGTESPISKVIHHQSKSKRQMSPYKFISSFLTSPLRKRTYSFSGKPKQQVQQQQHHPNPQQALLKCF SYNEIARATNDFDPGYIVGRGGYSEVYRGDLCDGRAIAVKRLAKDNKDANKEKEFLTELGILGHVCHPNTATLVGCCIENGLYLVFSFSQNGNLSSALHG DLKGEVLDWETRYRIVLGVARGLHYLHKCCKRRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPIEGTFGYLAPEYFMHGIVDEKTDVFA FGVLLLEIISGRRPVDSSMQNLLLWAKPLMESGNVAELADSKLEGRFDEYQMHRVVLTASYCVRQSAAWRPSMSEVLELLTSAGQDSEALSTKSGRIPKF TSDELDDFSMVYGYDFPIDIDLEEYL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57670			Protein kinase superfamily pro...		Lus10019990 [exp]	0	1
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10019971 [exp]	2.0	0.8611
					Lus10031949 [exp]	3.9	0.8428
AT5G42030		ABIL4	ABL interactor-like protein 4 ...		Lus10023654 [exp]	8.2	0.8708
AT5G01790			unknown protein		Lus10030550 [exp]	8.9	0.8315
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10017391 [exp]	9.8	0.8388
AT1G78060			Glycosyl hydrolase family prot...		Lus10022374 [exp]	13.7	0.8376
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	15.9	0.8311
AT3G59310			Eukaryotic protein of unknown ...		Lus10004060 [exp]	16.0	0.7922
AT1G07080			Thioredoxin superfamily protei...		Lus10022669 [exp]	16.4	0.8514
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10010895 [exp]	16.8	0.7490

Compare expression of checked genes

Lus10019990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.