Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15560 480 / 2e-161 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) AT3G21500 414 / 7e-137 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2) AT5G11380 281 / 1e-86 DXPS3 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) AT5G50850 50 / 4e-06 MAB1 MACCI-BOU, Transketolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033987 [exp] 792 / 0 AT4G15560 1134 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10015517 [exp] 773 / 0 AT4G15560 1020 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10019991 [exp] 766 / 0 AT4G15560 1018 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10001322 [exp] 633 / 0 AT4G15560 1021 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10006984 [exp] 627 / 0 AT4G15560 1023 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10012724 [exp] 523 / 4e-178 AT4G15560 1030 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10002663 [exp] 518 / 4e-176 AT4G15560 1026 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10015519 [exp] 487 / 6e-169 AT4G15560 578 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10012789 [exp] 474 / 3e-159 AT4G15560 1229 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G171700 [exp] 578 / 0 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.007G058500 [exp] 516 / 2e-175 AT4G15560 999 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.010G015200 [exp] 474 / 8e-159 AT4G15560 1227 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.008G196500 [exp] 473 / 2e-158 AT4G15560 1207 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G249700 [exp] 306 / 2e-94 AT5G11380 949 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.018G031800 [exp] 298 / 4e-91 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.003G166400 [exp] 49 / 8e-06 AT5G50850 636 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.001G061400 [exp] 46 / 5e-05 AT5G50850 640 / 0.0 MACCI-BOU, Transketolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF00676 [flax] [poplar] E1_dh Dehydrogenase E1 component CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [flax] [poplar] TKC_like PF02780 [flax] [poplar] Transketolase_C Transketolase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019992 pacid=23156126 polypeptide=Lus10019992 locus=Lus10019992.g ID=Lus10019992.BGIv1.0 annot-version=v1.0 ATGACTTCTTCCGTTTTGAGATCAGCTTTCCTTCCTAATTTGATCCATTCTGAAGATGCTCAATCTTTCTCAAGCTTCCCTCCAAAACCCACCTCAGCCA CTCTCCGACCCAGAAAGAAGAGCAGAGGAGGCCTGGTGGCTGCAATGGAGAGTGATGATGTCAATGACAATAAGGTAGAGAAGTACAATGAAACTACAAA GGAAAAGAGAATGCTTGACTTCTCAGGGAACAAGCCTTCCACTCCAATTCTGGACACCATTAACTATCCAAATCACATGAACAATCTCTCAACTGAGGAG CTTGAAACATTGGCTGATGAGTTGAGGGAAGAGATTGTCTACTCTGTTTCAAAGACAGGTGGTCACCTCAGCTCAAGCTTGGGAGTAGCTGAACTCACTG TGGCCCTCCACCATGTTTTCAACACCCCCGAGGATAAGATCATTTGGGACGTTGGCCATCAGTCATACCCGCACAAGATATTAACAGGAAGAAGATCCAA GATGGGGTCAATCCGCCAGACATTCGGGTTAGCGGGATTCCCAAAGAGGGACGAGAGTGAGCACGATGCATTTGGAGCTGGACACAGCTCCACAAGCATC TCAGCTGGATTAGGAATGGCCGTTGGTAGGGACTTGCTCGGGAAAAGCAACCATGTCATTGCGGTCATAGGAGATGGAGCCATGACTGCTGGCCAAGCTT ATGAAGCAATGAACAATGCTGGTTACTTGGATTCCAATTTAATCATCATCTTGAATGACAATAAGCAAGTTTCTTTGCCAACCGCCACTGTCGATGGTCC TGCACCTCCTGTTGGAGCACTGAGTAAGGCCTTGACCAAGTTGCATTCAAGCCGAAAGCTTCGCCTGCTCAGGGAATCGGCCAAGGAGGTGACAAAGAAG ATTGGTGGGCCGAAAACATATGAAGTAGCAGCCAAAGTTGATTCCTATGTGAGAGGGATTTCGGGCGGGGCAGGAGCAAGCTTGTTTGAAGAGCTTGGAT TGTACTACATTGGACCTGTTGATGGACATGATGTTGAGGATCTTGTCTACTTGTTGAAGAAGATTAAAACAATGCCAGCACCTGGTCCTGTTCTCATTCA TGTTGTCACTGAGAAAGGCAAAGGTTATGCTCCTGCTGAATCTGCAGCAGATAAGATGCATGGTGTTGTCAAGTTTGATCCTTTGTCCGGGAAGCAAGTC AAGACTAAGACTCCTACAAAGTCGGATCTTCAGAAGCTTCCTGTAAGGTTCGCTATCGACAGAGCTGGTCTTGTTGGTGCAGATGGACCGACACATTGTG GAGCCTTCGACACCACTTTCATGGCCTGCTTGCCAAACATGGTGGTCATGGCTCCTTCTGATGAGACTGAGCTCATCCATATGGTTGCTACTGCTGCAGC CATCGATGATCGTCCGAGTTGCTTTAGGTACCCTAGAGGCAATGGAATTGGTACTGTTATTCCACAAAACAACAAAGGAACACCTCTTGAGGTTGGTAAG GGAAGAGTGCTGAGAGAAGGAAGTAGGGTTGCTATATTAGGGTATGGAACAATAGTACAGAACTGCATTGAAGCTGCTGACAAGCTTCAAGTACTTGGAA TAAAGCCAACAGTGGCTGATGCTAGGTTCTGCAAGCCACTTGATGGAGAGCTCATTAGAATGCTGGCTAAAGAACATGAAGTTCTTATCACAGTGGAGGA AGGTTCCATTGGAGGGTTCAGCTCTCATGTATGCCATTACTTGAGCTTGAATGGATTGCTTGATGGAAAGCTCAAGTGGAGACCAATGTTGCTTCCAGAC AGATACATTGACCATGGATCTCAAACTGATCAGATTGAAGCTGCTGGGCTGAGTTCTAAGCAAATTGCAGCTACTGTTCTTTCTCTTATTGGAGGTCACA AGGATAGCCTCCACATTATGGATATGTGA
AA sequence Show only first row Show all	>Lus10019992 pacid=23156126 polypeptide=Lus10019992 locus=Lus10019992.g ID=Lus10019992.BGIv1.0 annot-version=v1.0 MTSSVLRSAFLPNLIHSEDAQSFSSFPPKPTSATLRPRKKSRGGLVAAMESDDVNDNKVEKYNETTKEKRMLDFSGNKPSTPILDTINYPNHMNNLSTEE LETLADELREEIVYSVSKTGGHLSSSLGVAELTVALHHVFNTPEDKIIWDVGHQSYPHKILTGRRSKMGSIRQTFGLAGFPKRDESEHDAFGAGHSSTSI SAGLGMAVGRDLLGKSNHVIAVIGDGAMTAGQAYEAMNNAGYLDSNLIIILNDNKQVSLPTATVDGPAPPVGALSKALTKLHSSRKLRLLRESAKEVTKK IGGPKTYEVAAKVDSYVRGISGGAGASLFEELGLYYIGPVDGHDVEDLVYLLKKIKTMPAPGPVLIHVVTEKGKGYAPAESAADKMHGVVKFDPLSGKQV KTKTPTKSDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMAPSDETELIHMVATAAAIDDRPSCFRYPRGNGIGTVIPQNNKGTPLEVGK GRVLREGSRVAILGYGTIVQNCIEAADKLQVLGIKPTVADARFCKPLDGELIRMLAKEHEVLITVEEGSIGGFSSHVCHYLSLNGLLDGKLKWRPMLLPD RYIDHGSQTDQIEAAGLSSKQIAATVLSLIGGHKDSLHIMDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019992 [exp]	0	1
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015519 [exp]	1.7	0.9523
					Lus10005395 [exp]	2.4	0.9459
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	2.8	0.9519
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Lus10021610 [exp]	3.2	0.9335
AT5G10820			Major facilitator superfamily ...		Lus10026890 [exp]	5.3	0.9374
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10024882 [exp]	7.3	0.9088
					Lus10005397 [exp]	7.3	0.9323
AT2G47510		FUM1	fumarase 1 (.1.2)		Lus10028532 [exp]	8.5	0.9220
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10038361 [exp]	9.0	0.9260
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10029370 [exp]	9.9	0.8985

Compare expression of checked genes

Lus10019992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.