Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76140 1008 / 0 Prolyl oligopeptidase family protein (.1.2) AT1G20380 987 / 0 Prolyl oligopeptidase family protein (.1) AT1G50380 179 / 3e-47 Prolyl oligopeptidase family protein (.1) AT1G69020 116 / 9e-27 Prolyl oligopeptidase family protein (.1) AT5G66960 81 / 2e-15 Prolyl oligopeptidase family protein (.1) AT5G36210 45 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034556 [exp] 1282 / 0 AT1G76140 1056 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10021235 [exp] 1103 / 0 AT1G76140 1184 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10034558 [exp] 665 / 0 AT1G76140 565 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10015387 [exp] 191 / 6e-51 AT1G50380 1096 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032920 [exp] 179 / 3e-47 AT1G50380 1018 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10004631 [exp] 149 / 3e-37 AT1G69020 830 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026683 [exp] 138 / 1e-33 AT1G69020 785 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10017568 [exp] 99 / 4e-21 AT5G66960 1124 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032378 [exp] 97 / 2e-20 AT1G69020 372 / 1e-116 Prolyl oligopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247300 [exp] 1045 / 0 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247400 [exp] 1041 / 0 AT1G76140 1210 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G013900 [exp] 1041 / 0 AT1G76140 1165 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G014000 [exp] 1035 / 0 AT1G76140 1217 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.007G001300 [exp] 188 / 2e-50 AT1G50380 1149 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.010G137801 [exp] 112 / 3e-25 AT1G69020 889 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G035900 [exp] 99 / 4e-21 AT5G66960 1087 / 0.0 Prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF02897 [flax] [poplar] Peptidase_S9_N Prolyl oligopeptidase, N-terminal beta-propeller domain CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10019994 pacid=23156249 polypeptide=Lus10019994 locus=Lus10019994.g ID=Lus10019994.BGIv1.0 annot-version=v1.0 ATGGGATCGGTAACAGGTATTGACGGTGGATTACGCTATCCAACAGCTCGCAAGGATGAGTCTACCGTCGATTATTACCATGGCGTCAAGGTTGCTGACC CCTTTAGATGGCTGGAGGATCCAGAATCGAAGGAAACGAAGGAGTTTGTGGCAGAGCAAGTGAAGTTGAGCAATTCAGTGTTGAAGAGTTGCGAGATGAA AGATAAGCTTAAGGAAAAGATAAGTCAGATGATGGATTATCCCCGCTATGAAGGTGCGCCATTGAAGCGAGGGGATAATAAATACTTCTATTTACACAAC ACCGGCCTTCAGCCCCACAGCGTTCTTTACGTTCAGGAAGGGTTGGAAGGAAAGGGAGAGGTGTTGGTGGACCCGAACGAACTAAGCGATGACGGGAGTG TAGCAATGACTGCTTACTCCGTAAGCGAGGATGCGAAATACTTGGCTTATGAGCTCAGCTACTGTGGCAGCGATTGGGTCACCATCAAACTCCTCTCTGT TGATGATATGAGATTGCTGGAGGCTGACACTCTTTCATGGGCAAAGTTTACAGAAATCAACTGGACACATGATAGCAAAGGCTTCTTCTATTGCCGTTAC CCTGCTCCCAAAGATGGAGAAAAGTCAGATGCTGGTACAGAAACCGATAGTAATCTGAATCTGCAATTGTACTACCATTTTGTTGGTACAGATCAATCCC ATGACATCCTCTGTTGGGCAGATAAACAAAACCCTACCCACATATTCAACGTCACTGTCACAGACGATGGCAAGTACCTTCTCCTATACGTCACTGATGG GGCTCTTACAAGCAACAAAGTTTATTACTATGATATCTCCGCGGGACTAGGAAGTTTCAGAAACAGTATGCTCCCTTTCACTAAGCTCGTCGATACCTTC GAGGCAAAATATGACGCCATTGCAAATGATGGCACATTGTTTACTTTCCTCACCAACAAAGATGCTCCTTTATATAAACTAGTTCGGGTTGATTTGAACG AACCTAGCTCGTGGACGGATGTCATTCCACAATCTGACAAGGATGTGTTGGAAAATGCATATGCGGTTAATGGAGATCGTTTGATAGTTTGTTACCTCAG CGACGTTAAGAGTGTGTTGCAGATCAGAGACTTGGAGACCGGATCGTATCTGCAGCAGCTTCCCATTGAAGTTGGTGCGGTGACTGCGATTTCCACAAGG AGAAAGGAGAGTTCAGCATTTATGGCCTTTACAGGGTTTCTTTTCCCTGGCATCATCTATCAATGCGATTTCGAATCTGGCACTCCGGAATTGAAGATAT TTCGGGAGATGAGTGTACCTGGATTCGATCGTGCAGAGTTCCAAGTAAATCAGGTTTTTGTGACTAGTAAAGACGGGACCAAGTTCCCGATGTTCATCGG GTCTACGAAAGGTATAGAACTGGATGGATCACACCCATGTTTGCTGTATGGATATGGTGGATTTGGGGTCAATACTACTCCAGATTTCAAAGCAGCTCGA ATAGCACTGGCGAAGCATTTAGGAGTAGTGTTCTGCATTGCCAACATACGTGGTGGTGGTGAGTACGGTAAAGAATGGCACAAAGCAGGCTCACGTGCCA ACAAGCAGAACGTCTTTGATGATTTCATCTGTGCCGCTGAATACCTCGTATCAGCTGGGTACACCACCCGGAAAAAGCTGTGCATCGAAGGTGTAAGCCA TGGCGGCATCGTCGTCGCTGCTTGCATCAATCAGAGACCAGATCTCTTCGGCTGCGCTCTGGCTCATGTTGGTGTTATGGACATGCTCCGATTCCACTTG TTCACTACAGGCCATATTGGTATTTCTGAATGTGGCTGTTCAGAAAACGAGCAACAATTCAATTGGCTGATCAAGTACTCTCCACTGCACAATGTGAGGA GACCGTGGGAAGTGAACCCGGATGAGGCAGTTCAGTACCCGCCGACCATGTTGTTGACTGGCGATCACGACGATCGAGTTGTTCCATTACACTCTCTGAA GATGTTGGCGACGTTGCAGACTGTTCTGATCACGAGCTTGGAGAAGAGCCCCCAAACCAACCCTATAATTGGCCGGATTGACCACAAGTCCGGCCACTGT GGCGGCCGTCCGACTCAGAAAGAGATTGATTTAGCTGGTGACTGTTATGGGTTCATAGCGAAGATGATGAATTTGGAGTGGACCGACTAG
AA sequence Show only first row Show all	>Lus10019994 pacid=23156249 polypeptide=Lus10019994 locus=Lus10019994.g ID=Lus10019994.BGIv1.0 annot-version=v1.0 MGSVTGIDGGLRYPTARKDESTVDYYHGVKVADPFRWLEDPESKETKEFVAEQVKLSNSVLKSCEMKDKLKEKISQMMDYPRYEGAPLKRGDNKYFYLHN TGLQPHSVLYVQEGLEGKGEVLVDPNELSDDGSVAMTAYSVSEDAKYLAYELSYCGSDWVTIKLLSVDDMRLLEADTLSWAKFTEINWTHDSKGFFYCRY PAPKDGEKSDAGTETDSNLNLQLYYHFVGTDQSHDILCWADKQNPTHIFNVTVTDDGKYLLLYVTDGALTSNKVYYYDISAGLGSFRNSMLPFTKLVDTF EAKYDAIANDGTLFTFLTNKDAPLYKLVRVDLNEPSSWTDVIPQSDKDVLENAYAVNGDRLIVCYLSDVKSVLQIRDLETGSYLQQLPIEVGAVTAISTR RKESSAFMAFTGFLFPGIIYQCDFESGTPELKIFREMSVPGFDRAEFQVNQVFVTSKDGTKFPMFIGSTKGIELDGSHPCLLYGYGGFGVNTTPDFKAAR IALAKHLGVVFCIANIRGGGEYGKEWHKAGSRANKQNVFDDFICAAEYLVSAGYTTRKKLCIEGVSHGGIVVAACINQRPDLFGCALAHVGVMDMLRFHL FTTGHIGISECGCSENEQQFNWLIKYSPLHNVRRPWEVNPDEAVQYPPTMLLTGDHDDRVVPLHSLKMLATLQTVLITSLEKSPQTNPIIGRIDHKSGHC GGRPTQKEIDLAGDCYGFIAKMMNLEWTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76140			Prolyl oligopeptidase family p...		Lus10019994 [exp]	0	1
AT1G73750			Uncharacterised conserved prot...		Lus10007966 [exp]	5.0	0.9303
					Lus10006661 [exp]	7.5	0.9293
					Lus10007179 [exp]	9.2	0.9293
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10009378 [exp]	10.6	0.9293
AT5G03795			Exostosin family protein (.1)		Lus10013790 [exp]	11.1	0.8073
					Lus10003840 [exp]	11.8	0.9293
					Lus10005396 [exp]	13.0	0.9293
					Lus10012429 [exp]	14.0	0.9293
					Lus10022573 [exp]	15.0	0.9293
AT5G48540			receptor-like protein kinase-r...		Lus10015472 [exp]	15.9	0.9293

Compare expression of checked genes

Lus10019994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.