Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30210 928 / 0 AR2, ATR2 P450 reductase 2 (.1.2) AT4G24520 813 / 0 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) AT3G02280 242 / 8e-71 Flavodoxin family protein (.1) AT1G30510 72 / 1e-13 ATRFNR2 root FNR 2 (.1.2.3) AT4G05390 70 / 1e-12 ATRFNR1 root FNR 1 (.1.2) AT5G66190 68 / 3e-12 ATLFNR1 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) AT1G20020 68 / 6e-12 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015525 [exp] 1276 / 0 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10006972 [exp] 1034 / 0 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2) Lus10032842 [exp] 737 / 0 AT4G24520 901 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10025485 [exp] 719 / 0 AT4G30210 681 / 0.0 P450 reductase 2 (.1.2) Lus10002416 [exp] 380 / 4e-127 AT4G24520 474 / 1e-164 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10025484 [exp] 305 / 4e-99 AT4G30210 318 / 2e-104 P450 reductase 2 (.1.2) Lus10017589 [exp] 183 / 2e-49 AT3G02280 810 / 0.0 Flavodoxin family protein (.1) Lus10033550 [exp] 69 / 9e-14 AT3G02280 121 / 7e-33 Flavodoxin family protein (.1) Lus10038538 [exp] 70 / 3e-12 AT4G05390 624 / 0.0 root FNR 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G092100 [exp] 996 / 0 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.006G167200 [exp] 984 / 0 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2) Potri.005G153800 [exp] 847 / 0 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.002G106566 [exp] 435 / 4e-149 AT4G24520 459 / 2e-159 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.002G106632 [exp] 281 / 1e-89 AT4G24520 269 / 1e-85 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.004G101100 [exp] 217 / 1e-61 AT3G02280 811 / 0.0 Flavodoxin family protein (.1) Potri.005G112900 [exp] 69 / 3e-12 AT5G66190 576 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.001G371900 [exp] 68 / 8e-12 AT4G05390 635 / 0.0 root FNR 1 (.1.2) Potri.007G057200 [exp] 63 / 3e-10 AT5G66190 592 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.011G027100 [exp] 56 / 3e-09 AT3G02280 144 / 2e-41 Flavodoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF00667 [flax] [poplar] FAD_binding_1 FAD binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain CL0042 [flax] [poplar] Flavoprotein PF00258 [flax] [poplar] Flavodoxin_1 Flavodoxin
Representative CDS sequence Show only first row Show all	>Lus10019996 pacid=23156241 polypeptide=Lus10019996 locus=Lus10019996.g ID=Lus10019996.BGIv1.0 annot-version=v1.0 ATGGATTCATCTTCGTCTGCATCGTCGGGGTCGCTGTTGTCGGCAATTGATATGCTGTCGGCAATTATCAGGGGCAAGACGGTTGACAACGCGGAGGCGG TGACTTCTATGATGACACTGGATAACAAGGAGTTCGTCATGATTCTCACTACTTCAATTGCCGTTCTGATCGGATGCGCGGTCGTACTCGTGTGGAGAAG ATCTACTCGGAAGGTGAAGAGCTTCGAGCCTCCCACGCCTTTGATTGTCAAGAAGAAGGAGGTGGAGGTGGTTGATGACGGCAAGACGAGAGTCACCGTG TTCTTCGGTACTCAGACTGGCACAGCTGAAGGATTCGCCAAGGCTTTAGTGGAGGAGGCGAAAGCGAGATATGAGAAAGCTGTGTTCACAGCCGTTGACT TGGATGACTATGCTGCGGATGACGATGAATACGAGGAGAAATTGAAGAAAGAGAATCTGGCTTTCTTCTTCCTAGCTACATATGGAGATGGTGAGCCCAC GGATAATGCGGCAAGGTTCTACAAGTGGTTTAGTGAGGGAAAAGATGAGAGGGGAGAATGGCTTAAAATGAAGTACGGAGTGTTCGGCCTTGGCAACAAG CAATACGAACACTTCAATAAGATTGCTGTGGAGGTGGATGATCTTCTAGCCGAGCAAGGTGGCAAACGGCTTGTTCCTGTGGGTCTCGGAGATGATGATC AATGCATGGAGGATGACTTTACTGCTTGGAAAGAGTTGGTGTGGCCTGAGCTCGATGGATTGCTTCGCGATGAGGATGATCAAACATCGGCGGCTACACC TTATACTGCAGCAGTATCGGAGTATAGGGTTGTGGTCTATGACACCACTGATGCGCCAGTAGAAGACAAAAGCTGGGGTAATGCCAATGGGCACACAGTT TATGATGCTCAACATCCATGCAGGGCTAATGTTGCTGTGAGGAAAGAGCTTCATACTTCTCAATCTGACCGATCTTGCACTCATTTGGAATTTGACATTG CTGGCACTGGACTTTCATATGAAACTGGGGACCACCTTGGTGTATACACTGAGAATGTTGAGGAGACTGTAGAAGAAGCACTGCAGTTGTTAGGTCTGTC ACCTGACACTTTCTTCTCTATCCATACTGACAACGAGGATGGGACACCACTCAGCGGAGGCTCCTTGGCACCACCATTCCCAGCTTGCACATTGCGAACA GCTCTGACTCGATATGCTGATCTTCTGAATGCACCCAAAAAGTCTGCTTTGCTTGCTTTAGCTGCTCATGCTACTGATCCAACTGAAGCTGATAGATTGA GGCATCTCGCCTCACCTGCTGGAAAGGATGAATATGCAAAATGGATGGTTGCGGAACAGAGAAGTCTCCTTGAAGTTATGGCTGCCTTCCCCTCTGCAAG GCCCCCACTTGGTGTATTCTTCGCTGCAGTTGCCCCTCGCTTGTTACCCAGATTCTACTCCATCTCTCCATCTCAAAGCATGGCTCCATCTAGAATTCAT GTCACTTGTGCTCTGGTACTTGAGAAAACACCCGGAGGACGGGTTCACAAGGGAGTATGCTCAACTTGGATGAAGAATGCTATTCCTATGGAGAAGACCC AGGATTGCAGTTGGGCGCCTGTTTTCGTTCGGCAATCAAATTTCAGACTCCCAGTAGATACTAAAGTTCCCATCATAATGATTGGTCCCGGCACAGGGCT GGCTCCTTTCAGGGGCTTCCTTCAGGAAAGATTAGCACTCAAAGAGGCTGGATCCGATCTAGGGACCTCCATCTTCTTCTTTGGTTGCAGAAATCGTACT ACGGATTTTATCTACGAGGAAGAACTCAACAACTTTGTCGAAACGGGTGCACTTTCCGAGCTCATAGTTGCCTTCTCCAGGGATGGACCTACCAAAGAGT ACGTGCAACATAAAATGATGCAGAAGGCTCAGGAAATCTGGAACCTGATATCTGAAGGAGCGTATGTTTACGTATGTGGTGATGCCAAAGGCATGGCAAG AGACGTTCACCGAACTCTGCACACCATTGCGATAGAGCAGGGTAAGCTGGATACATCAAAGGCGGAGAGCTTAGTGAAAAGTCTGCAGATGAACGGCCGT TACCTACGTGATGTATGGTAA
AA sequence Show only first row Show all	>Lus10019996 pacid=23156241 polypeptide=Lus10019996 locus=Lus10019996.g ID=Lus10019996.BGIv1.0 annot-version=v1.0 MDSSSSASSGSLLSAIDMLSAIIRGKTVDNAEAVTSMMTLDNKEFVMILTTSIAVLIGCAVVLVWRRSTRKVKSFEPPTPLIVKKKEVEVVDDGKTRVTV FFGTQTGTAEGFAKALVEEAKARYEKAVFTAVDLDDYAADDDEYEEKLKKENLAFFFLATYGDGEPTDNAARFYKWFSEGKDERGEWLKMKYGVFGLGNK QYEHFNKIAVEVDDLLAEQGGKRLVPVGLGDDDQCMEDDFTAWKELVWPELDGLLRDEDDQTSAATPYTAAVSEYRVVVYDTTDAPVEDKSWGNANGHTV YDAQHPCRANVAVRKELHTSQSDRSCTHLEFDIAGTGLSYETGDHLGVYTENVEETVEEALQLLGLSPDTFFSIHTDNEDGTPLSGGSLAPPFPACTLRT ALTRYADLLNAPKKSALLALAAHATDPTEADRLRHLASPAGKDEYAKWMVAEQRSLLEVMAAFPSARPPLGVFFAAVAPRLLPRFYSISPSQSMAPSRIH VTCALVLEKTPGGRVHKGVCSTWMKNAIPMEKTQDCSWAPVFVRQSNFRLPVDTKVPIIMIGPGTGLAPFRGFLQERLALKEAGSDLGTSIFFFGCRNRT TDFIYEEELNNFVETGALSELIVAFSRDGPTKEYVQHKMMQKAQEIWNLISEGAYVYVCGDAKGMARDVHRTLHTIAIEQGKLDTSKAESLVKSLQMNGR YLRDVW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10019996 [exp]	0	1
AT1G77580			Plant protein of unknown funct...		Lus10012712 [exp]	1.0	0.8971
AT5G35960			Protein kinase family protein ...		Lus10027964 [exp]	2.4	0.8363
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	7.2	0.8022
AT3G24180			Beta-glucosidase, GBA2 type fa...		Lus10000757 [exp]	7.4	0.8003
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	7.5	0.7924
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10011246 [exp]	10.4	0.8415
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10017277 [exp]	11.7	0.7898
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023080 [exp]	16.2	0.7747
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10006058 [exp]	18.7	0.6702
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10007815 [exp]	22.2	0.7353

Compare expression of checked genes

Lus10019996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.