Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57410 386 / 6e-135 Afadin/alpha-actinin-binding protein (.1.2.3) AT2G18876 379 / 8e-133 Afadin/alpha-actinin-binding protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015526 [exp] 491 / 1e-175 AT5G57410 566 / 0.0 Afadin/alpha-actinin-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G092000 [exp] 426 / 9e-150 AT5G57410 610 / 0.0 Afadin/alpha-actinin-binding protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11559 [flax] [poplar] ADIP Afadin- and alpha -actinin-Binding
Representative CDS sequence Show only first row Show all	>Lus10019997 pacid=23156161 polypeptide=Lus10019997 locus=Lus10019997.g ID=Lus10019997.BGIv1.0 annot-version=v1.0 ATGGCGACAGTGGCCGACTCCGGCTTGGATCTAGGAGCTTCTGCTTCCTTCTCGTTCTCCTCCGTCGGGGAGAACAAGTTTGCTGATACTGGCAACTTGG AGCACTGCGCCAAGTACTTGAACCAAACGCTTGTAACATTTGGATTTCCTGCTTCACTTGATCTCTTCGCCAATGATCCGGCAGCTAAGGCTACAGCAGC ATTCAAGGCTCAGATTGAAAAGCTTCAACAGGAACGTGACGAGTTTCAAAGGATGGTGATTGGTAATCAGCAAGTGAGAACTCAACAAATACATGAAATG AAGAAGAGAGAAAAGGAGTACATTAAGCTACAGGAGAAGCTAAATCAAGTTCTGATGGAGAAAAAGAAGGAATCCAGATCAGGCATGGAGATTATGAATT TGCTTCAGAAAGAAGGACGTCAACGAGGGACTTGGAATGGGAAGAAGACTGATAATGACTTCTATAAGAAAATTGTTGATGCGTATGAGGCTAAAAATCA GGAGCTGATGAATGAGAATTCTGATTTGAGGGCATTGCTGCGGTCAATGCAGGCTGACATGCGTGATTTCATAAATGCCCCAAATGGGTCGTCCAAGCAG TCCTTGGCAGTAAATGACCGACCTGAAGTTGACCCAAGTCAGTCTCCCTTGGGAGGAAGGACGGATGTGTTTGATCTGCCTTTTCACATGGCTAGGGATC ACATTGAAGAAAGCCTTCGAGCGAAGATGACATCCATAAAGGAGCGTATGGGCCAATTACAAGATGCACAAAAGGGAGCAGAAGTTACTTCGGAAGTTTC CGAAAGAGAACTTGAGCTTGAAGCTCAACTTGTTGAAGCAAGGAGCATTATCGAAGAGCAGGCGTCCATAATGTCTAAGCATCTCGCTAAGTCAGACAAG CCAAGGTATAGTCGATTCACATTCCTCGTCTTGCTCGTTTTAGCGATTTAA
AA sequence Show only first row Show all	>Lus10019997 pacid=23156161 polypeptide=Lus10019997 locus=Lus10019997.g ID=Lus10019997.BGIv1.0 annot-version=v1.0 MATVADSGLDLGASASFSFSSVGENKFADTGNLEHCAKYLNQTLVTFGFPASLDLFANDPAAKATAAFKAQIEKLQQERDEFQRMVIGNQQVRTQQIHEM KKREKEYIKLQEKLNQVLMEKKKESRSGMEIMNLLQKEGRQRGTWNGKKTDNDFYKKIVDAYEAKNQELMNENSDLRALLRSMQADMRDFINAPNGSSKQ SLAVNDRPEVDPSQSPLGGRTDVFDLPFHMARDHIEESLRAKMTSIKERMGQLQDAQKGAEVTSEVSERELELEAQLVEARSIIEEQASIMSKHLAKSDK PRYSRFTFLVLLVLAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10019997 [exp]	0	1
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10015526 [exp]	1.0	0.9451
AT1G17820			Putative integral membrane pro...		Lus10036188 [exp]	3.0	0.8904
AT1G31335			unknown protein		Lus10038328 [exp]	4.0	0.9211
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10015561 [exp]	4.9	0.8907
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10036045 [exp]	4.9	0.8963
AT3G20390			endoribonuclease L-PSP family ...		Lus10021523 [exp]	8.5	0.8849
AT1G06450			Polynucleotidyl transferase, r...		Lus10008043 [exp]	9.9	0.8853
					Lus10035688 [exp]	10.2	0.8824
AT3G53730			Histone superfamily protein (....		Lus10004949 [exp]	11.4	0.8885
AT3G51290			Protein of unknown function (D...		Lus10041884 [exp]	12.2	0.9041

Compare expression of checked genes

Lus10019997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.