Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57500 445 / 2e-158 Galactosyltransferase family protein (.1) AT3G06440 47 / 1e-05 Galactosyltransferase family protein (.1.2) AT1G27120 44 / 0.0001 Galactosyltransferase family protein (.1) AT4G21060 42 / 0.0005 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015527 [exp] 524 / 0 AT5G57500 473 / 2e-169 Galactosyltransferase family protein (.1) Lus10006963 [exp] 444 / 8e-158 AT5G57500 470 / 2e-168 Galactosyltransferase family protein (.1) Lus10000372 [exp] 292 / 8e-98 AT5G57500 300 / 2e-101 Galactosyltransferase family protein (.1) Lus10000407 [exp] 213 / 9e-69 AT5G57500 211 / 2e-68 Galactosyltransferase family protein (.1) Lus10006531 [exp] 197 / 3e-62 AT5G57500 202 / 1e-64 Galactosyltransferase family protein (.1) Lus10025474 [exp] 169 / 1e-51 AT5G57500 199 / 4e-64 Galactosyltransferase family protein (.1) Lus10032650 [exp] 44 / 0.0002 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2) Lus10043102 [exp] 42 / 0.0008 AT3G06440 575 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G094000 [exp] 430 / 3e-152 AT5G57500 493 / 3e-177 Galactosyltransferase family protein (.1) Potri.007G131000 [exp] 303 / 9e-102 AT5G57500 289 / 2e-96 Galactosyltransferase family protein (.1) Potri.010G151600 [exp] 45 / 6e-05 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10019998 pacid=23156223 polypeptide=Lus10019998 locus=Lus10019998.g ID=Lus10019998.BGIv1.0 annot-version=v1.0 ATGAAGCTCCCCACAAAACCGTACTCCCGCAATCGCCCATTCATCCTCTCCTCTTTAACATTCATATTTTTCTTCTGCCTCTTAGCCTCCGTCAATCAAA TCCGGTTTGACCAGCTCTTAAATCTCGGCCAATGCGCTCTCTCCGAATTCCAACTTTCTATCACTACTACTACCGCCCTCTCGTCCTCCTCTTCCTCCTC GATCCTTAATGTAGAGATCGAGGAGGAGGAGAATGAGATCCGCATTCTCATGGGGATCCTAACCCTCCCCGACCACTACCACAAGCGTCACTTTCTCCGC ATGATCTACGGGACCCAAAAGCCCCCACAAGGCACGACAATCGATGTGAAGTTCGTGTTCTGCAACCTCACTAAAGAAGACCAGAAAGTCTTGGTGGCGC TCGAGATCATGAGATATGACGACATAATCATCCTCAATTGTAAAGAGAACATGAACAACGGTAAGACCTACACGTACTTCTCTAGCCTCCCCGGCATTTT CTCCAATAATAAAAGTGACGTATCGTCGACATCCCCACCTTACCACTACGTCATGAAGGCTGACGACGATTCGTACTTCCGCCTAGAAAGCCTAGCTTCG TCGTTGAGGCCACTCCCCCGCAAAGATTTCTACTATGGTTATGTCATCCCTTGCCCCAGTATGGACCCGTTCGTGAATTACATGTCCGGGATGGGGTATT TGGTGTCGTGGGATATCGCGGAGTGGATCAAGGATTCGGATATCCCTAAGAGGAATCAGGATGGACCCGAGGATAAGGTGTTCGGGCAATGGTTGAGAGA AGGTCGGAAGGCGAGGAATCGATACAATGCTAAGTGGTCGATGTATAACTTTCCGATACCCCCGACCGGTTGTACGCATGAGCTTTGGCCGGACACGGTG GCGGTGCATTTGTTAAAGAATCAAGAGAAGTGGATTCAGACTTTGAACTATTTCAACGTTACTAAGGATCTTAAGCCTTCCAAGTTATATCATATTCCTT GA
AA sequence Show only first row Show all	>Lus10019998 pacid=23156223 polypeptide=Lus10019998 locus=Lus10019998.g ID=Lus10019998.BGIv1.0 annot-version=v1.0 MKLPTKPYSRNRPFILSSLTFIFFFCLLASVNQIRFDQLLNLGQCALSEFQLSITTTTALSSSSSSSILNVEIEEEENEIRILMGILTLPDHYHKRHFLR MIYGTQKPPQGTTIDVKFVFCNLTKEDQKVLVALEIMRYDDIIILNCKENMNNGKTYTYFSSLPGIFSNNKSDVSSTSPPYHYVMKADDDSYFRLESLAS SLRPLPRKDFYYGYVIPCPSMDPFVNYMSGMGYLVSWDIAEWIKDSDIPKRNQDGPEDKVFGQWLREGRKARNRYNAKWSMYNFPIPPTGCTHELWPDTV AVHLLKNQEKWIQTLNYFNVTKDLKPSKLYHIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57500			Galactosyltransferase family p...		Lus10019998 [exp]	0	1
AT5G49190		ATSUS2, SSA, SU...	SUCROSE SYNTHASE FROM ARABIDOP...		Lus10010308 [exp]	1.4	0.9104
AT1G17860			Kunitz family trypsin and prot...		Lus10007888 [exp]	5.4	0.9197
AT4G19460			UDP-Glycosyltransferase superf...		Lus10034760 [exp]	11.3	0.8661
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Lus10002742 [exp]	13.3	0.8451
AT3G22060			Receptor-like protein kinase-r...		Lus10027145 [exp]	17.6	0.8366
AT1G49310			unknown protein		Lus10040476 [exp]	21.9	0.8903
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10016166 [exp]	22.8	0.8432
AT4G17260			Lactate/malate dehydrogenase f...		Lus10004350 [exp]	34.2	0.8709
AT1G02360			Chitinase family protein (.1)		Lus10009968 [exp]	49.2	0.8289
AT4G32060			calcium-binding EF hand family...		Lus10005346 [exp]	66.0	0.8427

Compare expression of checked genes

Lus10019998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.