Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25830 91 / 1e-22 Uncharacterised protein family (UPF0497) (.1) AT2G35760 55 / 4e-09 Uncharacterised protein family (UPF0497) (.1) AT4G16442 50 / 2e-07 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039060 [exp] 62 / 2e-11 AT2G35760 242 / 5e-82 Uncharacterised protein family (UPF0497) (.1) Lus10038800 [exp] 61 / 4e-11 AT2G35760 243 / 2e-82 Uncharacterised protein family (UPF0497) (.1) Lus10015528 [exp] 0 / 1 AT4G25830 108 / 2e-29 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G094500 [exp] 112 / 7e-31 AT4G25830 128 / 9e-38 Uncharacterised protein family (UPF0497) (.1) Potri.006G016900 [exp] 56 / 1e-09 AT2G35760 250 / 4e-85 Uncharacterised protein family (UPF0497) (.1) Potri.016G008800 [exp] 55 / 4e-09 AT2G35760 253 / 2e-86 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10019999 pacid=23156163 polypeptide=Lus10019999 locus=Lus10019999.g ID=Lus10019999.BGIv1.0 annot-version=v1.0 ATGATGAAGAAGAAGATCAATGGAGGAGCTACGGTGGTGGAGTGTGGGCTGAGACTCGGAGCTGTATTAACGCTGGTAGCAGCGGCCTGTTTGGTCGGAT TCGATTCTGAAACAGAGTTCGTTTTGTTTCTGGAACAAAGGGTCACTTACAAGAACTTGAATTCCCTCATGACTTTGGTGTATGTGGATATTGTGGCTGC TGCATACAACTTGGCTCGCCTTATAATATCTACCCTACTAATGATCAGCAGACGGAGTTCTTCACCAAGTAAGTTGAGTACCAGTGATGCGACGTCGTCC TCGTCGTCAGCGGCGGTTCAGTTACGTTGGTCTCTGATCATATTCCCCTGGCTTGCCTTTATCTTCGACCAGGTGGGGGTATATGTGACATTTGCGGCGA CGACAGCAGCTGTGCAGCATTCAACGATGGTGATGACAGGGGAAAGTGAATTGCAATGGCTGAAATGGTGCAACAAGTTCGCCAGATTCTGCGTACAGAT AGGAGGCGGCCTCTTCTCCAGTTCTCTAGCTTCAATTCTAATGGCGTTGCTTTCTTTCGTGTCCGCCTTCCGGTTATTCAGACTCTACTCTCCTAACCGC TTCCTTCGTCTCAAGTCCTCCTCAACTCCACCACCGCTCCCAAGGCCCTCGTCGTCATTGTGA
AA sequence Show only first row Show all	>Lus10019999 pacid=23156163 polypeptide=Lus10019999 locus=Lus10019999.g ID=Lus10019999.BGIv1.0 annot-version=v1.0 MMKKKINGGATVVECGLRLGAVLTLVAAACLVGFDSETEFVLFLEQRVTYKNLNSLMTLVYVDIVAAAYNLARLIISTLLMISRRSSSPSKLSTSDATSS SSSAAVQLRWSLIIFPWLAFIFDQVGVYVTFAATTAAVQHSTMVMTGESELQWLKWCNKFARFCVQIGGGLFSSSLASILMALLSFVSAFRLFRLYSPNR FLRLKSSSTPPPLPRPSSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25830			Uncharacterised protein family...		Lus10019999 [exp]	0	1
AT4G25830			Uncharacterised protein family...		Lus10015528 [exp]	1.0	0.9677
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10000754 [exp]	1.7	0.9153
AT1G13820			alpha/beta-Hydrolases superfam...		Lus10037072 [exp]	2.4	0.9170
AT5G65380			MATE efflux family protein (.1...		Lus10024945 [exp]	4.5	0.9141
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023626 [exp]	5.9	0.9035
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10009522 [exp]	6.0	0.9010
AT5G47180			Plant VAMP (vesicle-associated...		Lus10011004 [exp]	8.8	0.8693
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	10.2	0.8944
AT4G04750			Major facilitator superfamily ...		Lus10033795 [exp]	10.5	0.8823
AT1G74875			unknown protein		Lus10023768 [exp]	11.2	0.8540

Compare expression of checked genes

Lus10019999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.