Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30270 342 / 2e-119 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT5G57550 337 / 3e-117 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT4G25810 335 / 3e-116 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57560 334 / 4e-116 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT2G18800 335 / 5e-116 ATXTH21, XTH21, XTR17 xyloglucan endotransglucosylase/hydrolase 21 (.1) AT5G48070 320 / 2e-110 XTH20, ATXTH20 xyloglucan endotransglucosylase/hydrolase 20 (.1) AT4G14130 315 / 4e-108 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT5G57530 310 / 2e-106 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT1G65310 308 / 1e-105 XTH17, XTR1, ATXTH17 xyloglucan endotransglucosylase/hydrolase 17 (.1) AT5G57540 307 / 2e-105 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015529 [exp] 508 / 0 AT4G30270 346 / 6e-119 SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) Lus10000678 [exp] 328 / 2e-113 AT3G23730 410 / 6e-146 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10021638 [exp] 325 / 3e-112 AT3G23730 413 / 7e-147 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10028947 [exp] 316 / 1e-108 AT4G14130 437 / 2e-156 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10020773 [exp] 315 / 2e-108 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10030484 [exp] 315 / 2e-108 AT4G25810 398 / 9e-141 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Lus10020772 [exp] 313 / 9e-108 AT3G23730 393 / 7e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 313 / 9e-108 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10008522 [exp] 304 / 7e-104 AT3G23730 430 / 2e-153 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G094900 [exp] 342 / 5e-119 AT4G25810 410 / 8e-146 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095100 [exp] 337 / 3e-117 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 335 / 3e-116 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.013G005700 [exp] 333 / 1e-114 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G094800 [exp] 329 / 8e-114 AT4G25810 413 / 1e-146 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.005G007200 [exp] 318 / 1e-109 AT4G25810 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.005G201200 [exp] 315 / 5e-108 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201250 [exp] 314 / 7e-108 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.014G146100 [exp] 313 / 7e-108 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G236200 [exp] 311 / 9e-107 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10020000 pacid=23156167 polypeptide=Lus10020000 locus=Lus10020000.g ID=Lus10020000.BGIv1.0 annot-version=v1.0 ATGGCAACCTCATCCTCCTTGTTCCTAGTGTTAGTGTTGGCATCCATCATGGTAGGTCTCTCATTTGCGAGTAACTTCCAAGATGACATCGCCGTGACAT TCGGAGACGGCCGTGTCAGAATCCAAGACAGCGGCAACCTTATGAGTCTCTCCCTCGACAACTCTTCAGGCTCGGGGTTTCAGTCCAAAGCTGACTTCCT CTACGCCAAAGTCGACATGAAGATTAAACTCGTCCCCGGTAACTCTGCTGGCACTGTCACTTCTTTCTACTTAAAATCACAAGGGACGACATGGGACGAG ATAGACATGGAATTCCTAGGCAACACAAGCGGCGACCCATACGTCCTCCACACGAACATCTTCGTGAACGGCAACGGCAAGAGAGAACAACAATTCAACC TCTGGTTCGACCCGACAACCGATTTCCACTCCTACTCAATCATATGGAACCCTTCCCACATAGTCCTCGTAGTGGACGACAAGCCCCTCAGGGAGTACCG AAACCTCCAGCCCATGAACGTTCCCTACCCAACGACCCAGCCAATGAAGCTTTACGGGTCCATCTGGAACGCCGATGATTGGGCCACCCGTGGCGGACGG GTCAAGACCGATTGGTCCAAGGCCCCTTTCACCGCCTCCTTCAGTGACTACAACGCCGATGGTGATAAAAACTCCCCGTGGTACTCTGTGGAGAGGCTTG ACGGCGACGCCGTGAAACAGATGGAGTGGGTTCAGAAGAATTACATGGTGTACAACTACTGTTCTGATCCTAGTCGGTTCCCTGGCGGGTTGCCGGCGGA ATGTAACGTCGGCAAAAACTAA
AA sequence Show only first row Show all	>Lus10020000 pacid=23156167 polypeptide=Lus10020000 locus=Lus10020000.g ID=Lus10020000.BGIv1.0 annot-version=v1.0 MATSSSLFLVLVLASIMVGLSFASNFQDDIAVTFGDGRVRIQDSGNLMSLSLDNSSGSGFQSKADFLYAKVDMKIKLVPGNSAGTVTSFYLKSQGTTWDE IDMEFLGNTSGDPYVLHTNIFVNGNGKREQQFNLWFDPTTDFHSYSIIWNPSHIVLVVDDKPLREYRNLQPMNVPYPTTQPMKLYGSIWNADDWATRGGR VKTDWSKAPFTASFSDYNADGDKNSPWYSVERLDGDAVKQMEWVQKNYMVYNYCSDPSRFPGGLPAECNVGKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30270		XTH24, SEN4, BR...	SENESCENCE 4, meristem-5, MERI...		Lus10020000 [exp]	0	1

Compare expression of checked genes

Lus10020000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.