Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19250 684 / 0 FMO1 flavin-dependent monooxygenase 1 (.1) AT5G45180 533 / 0 Flavin-binding monooxygenase family protein (.1) AT2G33230 70 / 1e-12 YUC7 YUCCA 7 (.1) AT1G12200 69 / 4e-12 FMO flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) AT1G12130 64 / 1e-10 Flavin-binding monooxygenase family protein (.1) AT1G21430 64 / 1e-10 YUC11 Flavin-binding monooxygenase family protein (.1) AT1G04180 62 / 3e-10 YUC9 YUCCA 9 (.1) AT1G04610 62 / 5e-10 YUC3 YUCCA 3 (.1) AT4G28720 61 / 1e-09 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT5G43890 59 / 3e-09 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005178 [exp] 814 / 0 AT1G19250 744 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10038126 [exp] 793 / 0 AT1G19250 735 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10023940 [exp] 385 / 1e-128 AT1G19250 399 / 3e-134 flavin-dependent monooxygenase 1 (.1) Lus10013230 [exp] 321 / 7e-104 AT1G19250 341 / 2e-111 flavin-dependent monooxygenase 1 (.1) Lus10023941 [exp] 248 / 4e-78 AT1G19250 241 / 2e-75 flavin-dependent monooxygenase 1 (.1) Lus10023942 [exp] 225 / 5e-69 AT5G45180 215 / 4e-65 Flavin-binding monooxygenase family protein (.1) Lus10015529 [exp] 208 / 4e-62 AT4G30270 346 / 6e-119 SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) Lus10014439 [exp] 199 / 7e-58 AT1G19250 209 / 1e-61 flavin-dependent monooxygenase 1 (.1) Lus10030750 [exp] 131 / 2e-34 AT1G19250 148 / 5e-41 flavin-dependent monooxygenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G137600 [exp] 745 / 0 AT1G19250 699 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.001G335900 [exp] 699 / 0 AT1G19250 630 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.009G143500 [exp] 410 / 1e-138 AT1G19250 400 / 2e-134 flavin-dependent monooxygenase 1 (.1) Potri.006G060200 [exp] 377 / 1e-125 AT1G19250 378 / 5e-126 flavin-dependent monooxygenase 1 (.1) Potri.018G115800 [exp] 374 / 1e-124 AT1G19250 374 / 4e-124 flavin-dependent monooxygenase 1 (.1) Potri.005G250600 [exp] 328 / 1e-106 AT1G19250 330 / 4e-107 flavin-dependent monooxygenase 1 (.1) Potri.006G060300 [exp] 306 / 7e-100 AT1G19250 285 / 3e-91 flavin-dependent monooxygenase 1 (.1) Potri.010G062400 [exp] 76 / 2e-14 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.008G174600 [exp] 71 / 7e-13 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.013G019900 [exp] 66 / 3e-11 AT1G62600 513 / 0.0 Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10020001 pacid=23156128 polypeptide=Lus10020001 locus=Lus10020001.g ID=Lus10020001.BGIv1.0 annot-version=v1.0 ATGGCTGGCCGGAAGTCATCAAAAATCGGAATAATCGGAGCCGGAGTTAGCGGAATAGCTGCTCTGAAACAGTTAGCACACTACGAACCTATGGTGTTCG AGGCCAGCAACTACCTCGGTGGCGTATGGAAGAGCTGTTCCTACTCTTCAACCAAGCTCCAAACGCCGCGCAAGAATTTCGAGTTTTCTGACTTCCCTTG GCCCAACAGAGATGATCCTGCCTCCCCGTCTTCTGTCGAGGTATTGGATTACTTGACAGCTTATGCTCAACGGTTCGATCTCCTCAAGTATGTCCACTTC AACACCAAGGTGGTCGAGATCAAGTATCTCGGCAGCCAAACCACTGCATCCGGTGAGTATGGACACCTTCTCGCTGGAAAGCCGGTGTGGGCGGTGGCAG TCCGACGCAATGACTCCGACTCCATACAGTGGTACGAGTTCGAAATGCTAGTTGTATGCACTGGGAAATTCGGAGACATAGCGAAGATACCAGAGTTCCC GAGGAACAGAGGCCCCGAAGTATTCAAAGGGAAGGTGATGCATTCCATGGATTACTGCAAACTGGACAAGGAGGAAGCAACAGAGCTAATGAAGGGCAAG ACAGTGGCGATCGTTGGGTTCAAAAAATCGGCTCTCGATTTAGCGGTTGAATGCGCCGAAGCAAACCAAGGTCCGGAAGGGAAGGCATGTACGATGGTGA TAAGGACCTTACACTGGACTATCCCAAATTACTGGGTTTGGGGATTGCCACTCTTTTTCTTCTTCTCCACCAGATCCTCCCAGTTCATCAATCCAAGACC CAACCAAAGCCTTCTTAGAATCTTATTCTGCCTTCTCTCAACACCCTTGAGAAATGGAGTTTCCAAGTTTGTAGAATCCTACCTGCTTCACAAACTTCCA CTCAAGAAATATGGGTTGAAGCCCCAACACCCATTCATTGAAGACTATGCATCCTGCCAAATGGCAATCACCCCGCCAGATTTCTTCCCACAGGCAGACA AGGGAAAGATATTGTTCAAGAGGGCATCGGACTGGTATTTCACAAGCGATGGGATCCAGTTTCAAAAAGACAAAACTACCCTCAAGGCTGATGTTGTCAT TTTAGCAACCGGATACGACGGGAAGAAGAAGCTGAGCGACATCATTCCAGAGCCGTTCCGTAGCAACCTGCTAGAGCACCCTAGCGGCGTGATGCCCTTA TACAGGGGCACGATTAACCCGCTAATACCGAACATGGCCTTCGTGGGCTACGTAGAGAGTTCGGCCAACCTCCACACTTCGGAGCTCCGCAGCATATGGC TGGCGCGACTGGTTGACAAGAGATTCGAGCTCCCAGCAGTGGAGAAAATGAGCGAGCATATATCGGATGAGATCGAGATCACGAGGAAGACATCGAGGTT CTATCAGAGGCATTGCATCTCCAGCTACAGTATCAATCACAATGATGAGATTTGTGAAGAGATGGGATGGAGGTCTTGGAGAAAGAAATCTTTTCTAGCT GAGGCACTAAACCCTTACGGTAGCAGTGACTACAGAGAAAACTGGTGA
AA sequence Show only first row Show all	>Lus10020001 pacid=23156128 polypeptide=Lus10020001 locus=Lus10020001.g ID=Lus10020001.BGIv1.0 annot-version=v1.0 MAGRKSSKIGIIGAGVSGIAALKQLAHYEPMVFEASNYLGGVWKSCSYSSTKLQTPRKNFEFSDFPWPNRDDPASPSSVEVLDYLTAYAQRFDLLKYVHF NTKVVEIKYLGSQTTASGEYGHLLAGKPVWAVAVRRNDSDSIQWYEFEMLVVCTGKFGDIAKIPEFPRNRGPEVFKGKVMHSMDYCKLDKEEATELMKGK TVAIVGFKKSALDLAVECAEANQGPEGKACTMVIRTLHWTIPNYWVWGLPLFFFFSTRSSQFINPRPNQSLLRILFCLLSTPLRNGVSKFVESYLLHKLP LKKYGLKPQHPFIEDYASCQMAITPPDFFPQADKGKILFKRASDWYFTSDGIQFQKDKTTLKADVVILATGYDGKKKLSDIIPEPFRSNLLEHPSGVMPL YRGTINPLIPNMAFVGYVESSANLHTSELRSIWLARLVDKRFELPAVEKMSEHISDEIEITRKTSRFYQRHCISSYSINHNDEICEEMGWRSWRKKSFLA EALNPYGSSDYRENW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10020001 [exp]	0	1
AT5G24230			Lipase class 3-related protein...		Lus10018097 [exp]	1.0	0.9745
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10041935 [exp]	2.4	0.8884
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025414 [exp]	3.5	0.8713
					Lus10026426 [exp]	6.3	0.8907
AT3G44910		ATCHX12	cation/H+ exchanger 12, cation...		Lus10040962 [exp]	8.7	0.8147
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10029564 [exp]	15.1	0.8114
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029690 [exp]	20.1	0.7628
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10020822 [exp]	22.8	0.7303
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10016711 [exp]	23.9	0.7425
					Lus10017801 [exp]	25.0	0.7823

Compare expression of checked genes

Lus10020001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.