Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18940 961 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 558 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 266 / 2e-76 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT1G63130 241 / 2e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G14770 243 / 5e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 239 / 8e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 240 / 3e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 234 / 5e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 227 / 2e-64 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62670 224 / 4e-63 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015530 [exp] 1505 / 0 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006962 [exp] 1022 / 0 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025473 [exp] 1018 / 0 AT2G18940 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002107 [exp] 534 / 1e-178 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 537 / 4e-178 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000035 [exp] 459 / 6e-158 AT2G18940 281 / 6e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000036 [exp] 449 / 6e-154 AT2G18940 279 / 4e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033127 [exp] 259 / 7e-74 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10043417 [exp] 248 / 1e-69 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G166200 [exp] 1034 / 0 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G297300 [exp] 565 / 0 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 562 / 0 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G069100 [exp] 254 / 4e-72 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.010G014100 [exp] 254 / 6e-72 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 245 / 8e-70 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G217600 [exp] 244 / 4e-69 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 236 / 5e-67 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G109500 [exp] 229 / 3e-65 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G025600 [exp] 230 / 7e-65 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020002 pacid=23156152 polypeptide=Lus10020002 locus=Lus10020002.g ID=Lus10020002.BGIv1.0 annot-version=v1.0 ATGGAAGGAACTCTATTCCCCGCCAAACCCATCTACACCGTCCCAATCAACCGCCCATCGCCGCAGCAACCGCCCAACCAACCTCTGAATTTCACCTCGC CCACTCTCCCTCCCCCGCCGCCGCCGCCGTTGTCCACTTCTCGCCGCTCGTTTCCCCTCACCCTTCATTTCGATTCCCTCCTTCAGCAGCTCCTTCGTCT CTCCTCTTCTCGCAATGCCAAGCTTAAGAACTCCCATTTTCGCTCTCTCCAGCGCAAGGAATATCGGGGTGCTGTGTTATTGGGGGCGGATGACAATGAA GAAGAAGAAGAAGAAGAGAGTAGCTCTTATGGTAGTGGTTCGTTGAATTTCTTATCCAAAGACGATTACGCCATGCTGGATTCGATTATGAACCAGCCTC TTCAAGGTCTTAAAGATTTTTTCAATTCCCGCAAATATGAGCTGGCTCAACTGGATTTGCTTAGTTTGTTGAAAGGATTGGACCGTTCAGGGAGTTGGGA GAGGGCGCTCTTGTTGTTTGAATGGGTGGTTTTCAATTTGGATGGGAGGGAGAGTGGGAAGGTAGTAGATAGTAAGATGGTTGGACTTATGGTGAGAATT CTTGGTAGGGAGTCTCAGCATTCTATTGCATCCCAAGTGTTTGATATGATTCCTCTGAAGGAATACCAGCTTGATGTTCGGGCGTATACTACCGTTCTTC ATGCCTATTCTCGTGCTGGAGAGTATGAGAAAGCGATTGCTATGTTCCGGAGGATGAAACACTCCGGCATCTCCCCTACTTTGGTTACTTACAATGTTAT GCTTGATGTGTATGGGAAGATGGGTGGCTCTTGGAATCAAATTTTGGGTCTTTTAGACGAGATGAGAGGTCAAGGCATGGAATTTGACGAATTCACTTGC AGTACTGTCATAGCTGCTTGCGGGAGGGACGGTTTGATCAATGAGGCAAAGGAGTTCTTTGCTGGACTCAAGTCTAGGGGATATGTTCCGGGAACTGTTA CTTACAATGCGTTGCTGCAGGTATTTGCCAAGGCAGGTATTCATATGGAGGCTTTGAGTATCTTGAGAGAAATGGAGGAGAGCAATTGTCAACCTGATTC CGTTACGTATAATGAGCTTGTTGCTGCGTATGTGAGGGCAGGTTTATTCGAGGAAGGCGCTGCTGTTATTGATACGATGATCGTCAAGGGAACGATGCCA AATGTTGTTACTTATACTACTCTGGTAAATGCTTATGGTAAAGCAGGAGAGATAGACAAGGCTATGGAGCTTTTTGCACGCATGAAGCAGTTGGGTTGTG CACCGAATGTCTGTACTTACAACGCTCTTCTAATCATGCTAGGAAAGAAATCACGTTCCCAGGAGATGCTGTCGTTGCTCTCTGATATGAAAGCGTACCG GTGTGTGCCTAACCGTGTTACATGGAACGCAATGCTTGCCATCTGTGGTGCCAAGGGTATGCAGAGCTACGTGGATCGCGTTTTCCAAGAGATGAAAGCC TCCGGTTTCGAGCCTGATAGAGATACCTTCAACACTTTGATTACTGCCTATGGTCGGTGTGGTTCAGACATCGTTTCCTCGAACATGCATGAACAAATGA TCAAAGCAGGTTTCACACCAAGCATCTCCACTTACAACGCACTCCTGAATGCTCTGGCTCGTAGAGGGGATTGGGAAGGAGCCGAATCAATCATTAAAGA CATGGAAAGTAAAGGATTTAATCCCACCGAAACTTCTTACTCGATGCTTATTAATGCATATGCAAAAGGAGGAAAAGTTGCAGGTATAGAGAGGATTGCA GAAAAAATTTATAGTGGTGACATCTTCCCTACCTGGATGCTGTTAAGAACCCTAGTTCTCGCATTCCACATTTGCAGATGGCTACCAGGGATGGAAAGGG CATTCGAGGTACTAAAGAAGCACGGGTACAAAATCGACCTGGTTCTTTACAACGCAATGTTATCAATGTTCGCCAAGAATAACTTAACCGACAGGGCCCA CGAGATGCTAAGGACTATCCGCAAGAGCGGGTTGCATCCTGACCTTGTCAGCTATAACAACTTGATGGACATGTACGCTCGAGGTGGAGATTGCTGGAAG GCAGAAGAGATCCTGAAAGGGCTACAAGATTCCGGTGGGAAACCAGATGTGGTATCGTACAACACAGTGATCAAAGGGTTCTGTAGAAAAGGGCTTATGC AAGAAGCGTTTCGAGTTCTGTCGGAGATGACCTCACGGGGTATCAGGCCTTGCATTTTCACGTACAACACGTTTGTAACAGGGTATGTCGGAGAAGGGAG GGTCGGGGAGATAATAGATGTTGTGAGGTATATGGTTGAGCACGGTTGCAGGCCGGAGATGCTGACGTACAAGATTGCAGTGGATGGTTACTGCAAGGCG AGGAAATATAAAGAGGCGCTGGAGTTCATATCGCAGATTAAGAGTATAGACAAGTGGTTCGATTTGGAGACTGAGCAAAGACTGGCTACTCATGTTCGGG ATATGTCCAAGTCTACAAGTCATCATGATTGTTTGACCAGGTAA
AA sequence Show only first row Show all	>Lus10020002 pacid=23156152 polypeptide=Lus10020002 locus=Lus10020002.g ID=Lus10020002.BGIv1.0 annot-version=v1.0 MEGTLFPAKPIYTVPINRPSPQQPPNQPLNFTSPTLPPPPPPPLSTSRRSFPLTLHFDSLLQQLLRLSSSRNAKLKNSHFRSLQRKEYRGAVLLGADDNE EEEEEESSSYGSGSLNFLSKDDYAMLDSIMNQPLQGLKDFFNSRKYELAQLDLLSLLKGLDRSGSWERALLLFEWVVFNLDGRESGKVVDSKMVGLMVRI LGRESQHSIASQVFDMIPLKEYQLDVRAYTTVLHAYSRAGEYEKAIAMFRRMKHSGISPTLVTYNVMLDVYGKMGGSWNQILGLLDEMRGQGMEFDEFTC STVIAACGRDGLINEAKEFFAGLKSRGYVPGTVTYNALLQVFAKAGIHMEALSILREMEESNCQPDSVTYNELVAAYVRAGLFEEGAAVIDTMIVKGTMP NVVTYTTLVNAYGKAGEIDKAMELFARMKQLGCAPNVCTYNALLIMLGKKSRSQEMLSLLSDMKAYRCVPNRVTWNAMLAICGAKGMQSYVDRVFQEMKA SGFEPDRDTFNTLITAYGRCGSDIVSSNMHEQMIKAGFTPSISTYNALLNALARRGDWEGAESIIKDMESKGFNPTETSYSMLINAYAKGGKVAGIERIA EKIYSGDIFPTWMLLRTLVLAFHICRWLPGMERAFEVLKKHGYKIDLVLYNAMLSMFAKNNLTDRAHEMLRTIRKSGLHPDLVSYNNLMDMYARGGDCWK AEEILKGLQDSGGKPDVVSYNTVIKGFCRKGLMQEAFRVLSEMTSRGIRPCIFTYNTFVTGYVGEGRVGEIIDVVRYMVEHGCRPEMLTYKIAVDGYCKA RKYKEALEFISQIKSIDKWFDLETEQRLATHVRDMSKSTSHHDCLTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10020002 [exp]	0	1
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10015530 [exp]	1.0	0.9726
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10011001 [exp]	1.4	0.9260
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10024971 [exp]	3.5	0.9074
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Lus10036366 [exp]	6.5	0.9000
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030649 [exp]	6.9	0.8917
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10014382 [exp]	6.9	0.8978
AT3G60750			Transketolase (.1.2)		Lus10031708 [exp]	8.7	0.9198
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Lus10014555 [exp]	13.2	0.8770
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10015531 [exp]	15.3	0.8761
AT2G42130			Plastid-lipid associated prote...		Lus10021055 [exp]	15.7	0.8993

Compare expression of checked genes

Lus10020002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.