Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57360 698 / 0 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G18915 622 / 0 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2) AT1G68050 558 / 0 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT1G51550 105 / 2e-24 Kelch repeat-containing F-box family protein (.1) AT1G08420 77 / 2e-14 BSL2 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) AT2G27210 77 / 2e-14 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT5G04420 76 / 2e-14 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G18610 71 / 1e-12 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 69 / 3e-12 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 68 / 6e-12 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015531 [exp] 742 / 0 AT5G57360 1051 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10025470 [exp] 708 / 0 AT5G57360 1031 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10006959 [exp] 705 / 0 AT5G57360 1024 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10029002 [exp] 557 / 0 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10019169 [exp] 554 / 0 AT1G68050 969 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10030757 [exp] 514 / 8e-178 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10013237 [exp] 514 / 8e-178 AT1G68050 940 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10034827 [exp] 102 / 2e-23 AT1G51550 504 / 5e-177 Kelch repeat-containing F-box family protein (.1) Lus10033377 [exp] 101 / 8e-23 AT1G51550 496 / 5e-174 Kelch repeat-containing F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090800 [exp] 711 / 0 AT5G57360 1042 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G166300 [exp] 701 / 0 AT5G57360 972 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G105700 [exp] 575 / 0 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.008G135200 [exp] 573 / 0 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.008G006300 [exp] 122 / 8e-30 AT1G51550 496 / 1e-173 Kelch repeat-containing F-box family protein (.1) Potri.010G252200 [exp] 122 / 8e-30 AT1G51550 500 / 3e-175 Kelch repeat-containing F-box family protein (.1) Potri.009G016900 [exp] 75 / 5e-14 AT2G27210 1588 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.008G031200 [exp] 75 / 5e-14 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.010G230300 [exp] 74 / 6e-14 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.001G215700 [exp] 75 / 7e-14 AT2G27210 1626 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10020003 pacid=23156248 polypeptide=Lus10020003 locus=Lus10020003.g ID=Lus10020003.BGIv1.0 annot-version=v1.0 ATGGAATGGGATAGCAGCAATTCGGATCTGAGTGGTGACGACGATGAGGAGGAGAGCTTCGACTTCGGCCAATCCGGTGCTCCAATCCCTTTCCCTGTCG AGAACTTGCTTCAAACTGCCCCTTGTGGGTTCGTCGTCACGGATAACCTCGAGCCTGACCATCCTATCATCTATGTCAATACCGTCTTCGAGATGGTTAC TGGTTATCGAGCTGAGGAAGTCCTTGGCCGCAACTGTGGGCTTTGTGGCATGCTGGTCTTGAGTGACGAGGTGATATCTCAGAGGATCCTGTCACTCTTA ACTCCAAGAGATATTGCCTCTGTCGGCTCAGTATGTCGACGATTATATGAGCTTACGAAGAATGAAGACCTCTGGAGAATGGTCTGCCAAAATGCTTGGG GATGTGAAACAACTCGTGTTCTAGAGACCGTACCAGGTGCCAAGAGATTGGGTTGGGGACGTCTTGCTCGCGAATTAACGACTCTTGAAGCAGCAGCATG GAGAAAGCTTACTGTTGGCGGTGGTGTTGAACCTTCACGCTGCAACTTTAGTGCTTGTGCAGTAGGGAACCGGGTTGTTCTGTTTGGAGGGGAAGGCGTT AATATGCAACCAATGAACGACACATTTGTATTAGATCTGAACGCCAGCATTCCAGAGTGGGAGCATGTCCAAGTGAGCTCTCCTCCTCCTGGGAGGTGGG GTCACACAATATCTTGTGTTAATGGCTCTAATTTGGTAGTTTTTGGAGGCTGTGGAAGGCAAGGATTACTGAATGATGTTTTCTTACTAGATTTGGATGC TAAGCCTCCAACTTGGCGAGAGATATCTGGATTGGCACCTCCACTTCCTCGATCATGGCATAGCTCATGCACTCTAGATGGTACCAAGTTGATTGTTTCC GGTGGGTGTGCCGATTCTGGAGTTCTTCTTAGTGACACATTTCTGCTAGATCTGTCAATGGAGAAACCAATTTGGAGAGAGATACCAGCTGCATGGACTC CACCTTCTCGGCTAGGCCATACACTTTCAGTTTATGGTGGCCGGAAAATATTGATGTTTGGGGGTCTGGCTAAGAGCGGGCCCCTAAGGTTCCGTTCCAG CGATGTCTTCACCATGGATTTAAGCGAGGAAGAACCATGTTGGAGATGTGTGACAGGGAGTGGAATGCCAGGAGCTGGAAATCCAGGGGGAGTAGCACCT CCCCCTAGACTTGATCATGTAGCTGTGAGCCTTCCAGGTGGTAGAATCGTGATTTTTGGAGGTTCGGTTGCTGGACTTCATTCCGCGTCACAACTTTACC TATTAGATCCAACAGAGGAGAAACCAACATGGAGAATTCTAAATGTACCAGGACGACCTCCTAGATTTGCATGGGGACACAGTACCTGTGTGGTTGGAGG GACAAGGGCCATCGTTCTTGGTGGACAAACCGGCGAGGAATGGATGCTAAGCGAGCTGCACGAGCTTTCCCTGGCTAGTTCATTGATATGA
AA sequence Show only first row Show all	>Lus10020003 pacid=23156248 polypeptide=Lus10020003 locus=Lus10020003.g ID=Lus10020003.BGIv1.0 annot-version=v1.0 MEWDSSNSDLSGDDDEEESFDFGQSGAPIPFPVENLLQTAPCGFVVTDNLEPDHPIIYVNTVFEMVTGYRAEEVLGRNCGLCGMLVLSDEVISQRILSLL TPRDIASVGSVCRRLYELTKNEDLWRMVCQNAWGCETTRVLETVPGAKRLGWGRLARELTTLEAAAWRKLTVGGGVEPSRCNFSACAVGNRVVLFGGEGV NMQPMNDTFVLDLNASIPEWEHVQVSSPPPGRWGHTISCVNGSNLVVFGGCGRQGLLNDVFLLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVS GGCADSGVLLSDTFLLDLSMEKPIWREIPAAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGVAP PPRLDHVAVSLPGGRIVIFGGSVAGLHSASQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10020003 [exp]	0	1
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10015531 [exp]	1.4	0.9094
AT4G35870			early-responsive to dehydratio...		Lus10041862 [exp]	2.0	0.8729
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017653 [exp]	3.5	0.8755
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10022862 [exp]	8.1	0.8656
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10015530 [exp]	8.1	0.8731
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10021717 [exp]	9.8	0.8448
AT3G58050			unknown protein		Lus10017239 [exp]	12.1	0.8486
AT5G21040		FBX2	F-box protein 2 (.1.2)		Lus10008402 [exp]	14.1	0.8385
AT1G80530			Major facilitator superfamily ...		Lus10041962 [exp]	16.4	0.8605
AT3G03210			unknown protein		Lus10020802 [exp]	18.7	0.7380

Compare expression of checked genes

Lus10020003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.