Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23570 115 / 1e-32 ATMES19 ARABIDOPSIS THALIANA METHYL ESTERASE 19, methyl esterase 19 (.1) AT2G23580 106 / 5e-29 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) AT3G50440 107 / 6e-29 ATMES10 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) AT2G23600 103 / 6e-28 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT4G37150 102 / 1e-27 ATMES9 ARABIDOPSIS THALIANA METHYL ESTERASE 9, methyl esterase 9 (.1) AT2G23560 102 / 3e-27 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT2G23620 100 / 9e-27 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT2G23550 100 / 1e-26 ATMES6, ABE1 ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, methyl esterase 6 (.1.2) AT2G23610 96 / 5e-25 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT5G10300 86 / 4e-21 AtHNL, HNL, ATMES5 HYDROXYNITRILE LYASE, ARABIDOPSIS THALIANA METHYL ESTERASE 5, methyl esterase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015532 [exp] 260 / 3e-89 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10022467 [exp] 189 / 2e-61 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10009203 [exp] 122 / 2e-34 AT2G23620 205 / 6e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10005400 [exp] 120 / 2e-34 AT2G23610 206 / 8e-66 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Lus10005402 [exp] 120 / 4e-34 AT2G23580 204 / 3e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10023326 [exp] 114 / 6e-32 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10000841 [exp] 107 / 6e-30 AT2G23570 129 / 1e-37 ARABIDOPSIS THALIANA METHYL ESTERASE 19, methyl esterase 19 (.1) Lus10009205 [exp] 108 / 7e-30 AT2G23580 194 / 3e-61 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10005401 [exp] 97 / 9e-25 AT2G23600 184 / 5e-56 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036700 [exp] 152 / 9e-47 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.007G036800 [exp] 135 / 1e-39 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.009G107200 [exp] 131 / 3e-38 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.009G107500 [exp] 126 / 2e-36 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.005G133600 [exp] 108 / 6e-30 AT2G23620 274 / 8e-93 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133700 [exp] 108 / 6e-30 AT2G23620 277 / 6e-94 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037700 [exp] 108 / 8e-30 AT2G23620 300 / 6e-103 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037300 [exp] 107 / 5e-29 AT2G23620 289 / 2e-98 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133800 [exp] 105 / 2e-28 AT2G23620 270 / 7e-91 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133900 [exp] 96 / 7e-25 AT2G23620 251 / 3e-84 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020004 pacid=23156157 polypeptide=Lus10020004 locus=Lus10020004.g ID=Lus10020004.BGIv1.0 annot-version=v1.0 ATGTGGTCGCAGGTGTTCAAGGGAATGGACTACATGGATGACCTGTTTTCATATGATGATGGCCCTGACAACCCTCTCACTACAGTATTGCTTGGTCGCA AAGCCATGTCAACTAAACTCTACCAGCTCTCCCCAGCAGAGGATCTGACACTGGGAATGATGCTAATAAAACCAGTTTGCCTATTCAAAGATAGTGAAGT GGATGCTGAAACAGTGCTGACAAGAGACAGATATGGATCAGTTCCTCGAGTTTATGTTGTATGCGAAGAAGATGAGAGTCTAAAACCCGACAAGCAGAGG TGGATGATTGAGAACAACCCAACTGACGAGGTCAAACCCATCTCCAGTGCTGATCATATGGTCATGTTCTCCAAACCGCATCACTTGTTCTCTTTTCTCC TCGAAATTGCTACCAACTATTTCTGA
AA sequence Show only first row Show all	>Lus10020004 pacid=23156157 polypeptide=Lus10020004 locus=Lus10020004.g ID=Lus10020004.BGIv1.0 annot-version=v1.0 MWSQVFKGMDYMDDLFSYDDGPDNPLTTVLLGRKAMSTKLYQLSPAEDLTLGMMLIKPVCLFKDSEVDAETVLTRDRYGSVPRVYVVCEEDESLKPDKQR WMIENNPTDEVKPISSADHMVMFSKPHHLFSFLLEIATNYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10020004 [exp]	0	1
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10018758 [exp]	1.0	0.9186
					Lus10034724 [exp]	5.5	0.8487
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10031352 [exp]	8.7	0.8391
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10019716 [exp]	8.9	0.8944
AT3G16970			Plant self-incompatibility pro...		Lus10030565 [exp]	11.7	0.8188
AT3G22640		PAP85	cupin family protein (.1)		Lus10042615 [exp]	12.4	0.8411
AT1G17400			unknown protein		Lus10039921 [exp]	13.9	0.8822
AT5G49690			UDP-Glycosyltransferase superf...		Lus10002351 [exp]	14.6	0.8775
					Lus10009439 [exp]	20.7	0.8759
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020083 [exp]	22.0	0.8617

Compare expression of checked genes

Lus10020004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.