Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57280 296 / 4e-101 RID2 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028960 [exp] 419 / 9e-150 AT5G57280 444 / 4e-159 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10007484 [exp] 402 / 4e-143 AT5G57280 436 / 9e-156 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10015533 [exp] 96 / 5e-25 AT5G57280 46 / 1e-06 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040430 [exp] 43 / 0.0002 AT1G36310 443 / 3e-156 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G338700 [exp] 337 / 2e-117 AT5G57280 370 / 1e-129 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.018G049800 [exp] 317 / 2e-109 AT5G57280 355 / 5e-124 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain CL0063 [flax] [poplar] PF12589 [flax] [poplar] WBS_methylT Methyltransferase involved in Williams-Beuren syndrome
Representative CDS sequence Show only first row Show all	>Lus10020005 pacid=23156188 polypeptide=Lus10020005 locus=Lus10020005.g ID=Lus10020005.BGIv1.0 annot-version=v1.0 ATGGCAACTCGCCCAGAAAATCTAGCGCCGCCTGAAATTTTCTACAACGATACAGAAGCTCGTAAATACACTTCATCTTCCCGAATTATCAAAATTCAGT CGCAGCTTTCCGAGAGAGCATTGGAACTTCTGGCTTTGCCTGATGATGGCGTCCCCAGATTGCTTCTCGATATTGGCTGCGGATCAGGGCTTAGTGGGGA GACATTGACTGAAAATTGCCATGAATGGATTGGTCTGGACATTTCAGAATCAATGCTAGATATTGCAGTGGAGCGAGAAGTTGATGGGGATCTTATGCTA CATGACATGGGTCAGGGCTTGCCATTTAGGCCTGGAACTATTGATGGTGCCATTAGCATCTCTGCTGTTCAGCGTGAGTTGATTCTGAGAGCAGCAATGC AAGCTGGGTTTGCTGGTGGAGTGGTTGTTGACTACCCACACAGTACCAAGAGCAGAAAGGAGTACTTGGTCCTCACTTGCGGACCAGCATCAATCGATGC AGCCGTTCCCAGACCAAAAGGTCTAGACGGCTACGAAAGCTGCTCTGAAGACGAAAGTGGTGATGCCTATGATGAAGAAAAGCAAACAGTTAGCATATCA GATAGACACAGACCAAAGAAAAGGCAAAAAGCAGGGAAGAAAGGGAAAGGGAAGCAATGGTTATTGAAGAAAAAGGAGCAGATGAGGGGTAAGGGATTTG AAGTCCCACCTGATACAAGATATACTGGCAGGAAACGCAAGGCAAAGTTTTGA
AA sequence Show only first row Show all	>Lus10020005 pacid=23156188 polypeptide=Lus10020005 locus=Lus10020005.g ID=Lus10020005.BGIv1.0 annot-version=v1.0 MATRPENLAPPEIFYNDTEARKYTSSSRIIKIQSQLSERALELLALPDDGVPRLLLDIGCGSGLSGETLTENCHEWIGLDISESMLDIAVEREVDGDLML HDMGQGLPFRPGTIDGAISISAVQRELILRAAMQAGFAGGVVVDYPHSTKSRKEYLVLTCGPASIDAAVPRPKGLDGYESCSEDESGDAYDEEKQTVSIS DRHRPKKRQKAGKKGKGKQWLLKKKEQMRGKGFEVPPDTRYTGRKRKAKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57280		RID2	root initiation defective 2, S...		Lus10020005 [exp]	0	1
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10014222 [exp]	3.2	0.8194
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10034486 [exp]	8.1	0.7571
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10025272 [exp]	14.3	0.8093
AT4G11720		HAP2, GCS1	GENERATIVE CELL-SPECIFIC 1, ha...		Lus10024496 [exp]	22.9	0.7906
AT3G07140			GPI transamidase component Gpi...		Lus10025918 [exp]	24.3	0.8094
AT4G24880			unknown protein		Lus10007295 [exp]	33.3	0.7722
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10001851 [exp]	38.9	0.7849
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10002516 [exp]	43.0	0.7408
AT1G09870			histidine acid phosphatase fam...		Lus10040951 [exp]	50.3	0.7618
AT5G58160			actin binding (.1)		Lus10024450 [exp]	52.2	0.7439

Compare expression of checked genes

Lus10020005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.