Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032559 [exp] 84 / 2e-19 ND 36 / 0.005
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G087000 [exp] 99 / 2e-25 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020006 pacid=23156233 polypeptide=Lus10020006 locus=Lus10020006.g ID=Lus10020006.BGIv1.0 annot-version=v1.0 ATGATGAAGAACAGGAAGTGTCAGATCATGATGGTTGGCATCATGGCAACCCTCCTCTACGTTGCCCCTCAAGTTTCCACTGCACTAAGGCCTAAATACT TGTACTTCATCTTCAACATCCTCATCATTGCCCTTGTTGCCGAAGCAGGCCTTCTTCCCTCCCTCTCCGCTCCCTTTTTCCACCAAAACCACACCAACAA CCACCACTTCATCACTACTACTAATAATACCGTCACCACCGCCGATGATCATCACGAGGAAACCGGTAATATAGCTGAAGATGCTGTTCAGTCCAAGAGG GTGGACAAGTTCTCACCTATAGCTGAAGATGCTGTTCAGTCCAAGAGGGTGGACAAGTTCTCACCAAAGAAGATTAAAAAGAGTTTGGTTGTAGTTAAGG TACTGGTGGATAAGATTGTTGAAACCTGTCCTATTGTACTACTCCCAATCCCAAGCCTCTTCTTCATTGGTGGGAATACTGTTACTGCCACTGCTGATGA AGATTCTTCCAATAGCGAGCAGGAGCTACATCATGATCAAGAGAAGGCAGATTCTAAATTACGAGAAGAAGAAGAAGAAGCAGTTGAAGAAAGGAGATCA GGGCTGGAACTTTTCACTAAAGCTGAAATGTTTATCGGAAATTTCTACAATCAGTTGAAGATGCAGAGAGATTCAATTGCAAGAGCTGAAGAGACCTACT CCTAG
AA sequence Show only first row Show all	>Lus10020006 pacid=23156233 polypeptide=Lus10020006 locus=Lus10020006.g ID=Lus10020006.BGIv1.0 annot-version=v1.0 MMKNRKCQIMMVGIMATLLYVAPQVSTALRPKYLYFIFNILIIALVAEAGLLPSLSAPFFHQNHTNNHHFITTTNNTVTTADDHHEETGNIAEDAVQSKR VDKFSPIAEDAVQSKRVDKFSPKKIKKSLVVVKVLVDKIVETCPIVLLPIPSLFFIGGNTVTATADEDSSNSEQELHHDQEKADSKLREEEEEAVEERRS GLELFTKAEMFIGNFYNQLKMQRDSIARAEETYS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020006 [exp]	0	1
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10031637 [exp]	2.8	0.9425
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10017878 [exp]	4.4	0.9012
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10016616 [exp]	4.6	0.9161
AT1G01360		PYL9, RCAR1	PYRABACTIN RESISTANCE 1-LIKE 9...		Lus10009812 [exp]	5.5	0.9059
AT5G03110			unknown protein		Lus10019920 [exp]	6.7	0.9118
AT4G22560			unknown protein		Lus10028927 [exp]	7.1	0.9228
AT1G71740			unknown protein		Lus10041497 [exp]	8.4	0.9114
AT4G20880			ethylene-responsive nuclear pr...		Lus10023347 [exp]	10.2	0.9068
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10014033 [exp]	10.6	0.9045
AT5G51550		EXL3	EXORDIUM like 3 (.1)		Lus10031709 [exp]	10.9	0.8768

Compare expression of checked genes

Lus10020006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.