Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26350 448 / 5e-158 PEX10, ATPEX10 peroxin 10 (.1) AT4G28270 62 / 3e-11 ATRMA2 RING membrane-anchor 2 (.1) AT4G03510 62 / 6e-11 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT4G27470 62 / 7e-11 ATRMA3 RING membrane-anchor 3 (.1) AT2G42030 56 / 2e-08 RING/U-box superfamily protein (.1) AT1G19310 54 / 3e-08 RING/U-box superfamily protein (.1) AT2G23780 54 / 4e-08 RING/U-box superfamily protein (.1) AT1G74990 52 / 5e-08 RING/U-box superfamily protein (.1) AT3G58030 54 / 6e-08 RING/U-box superfamily protein (.1.2.3.4) AT2G44410 51 / 6e-07 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026206 [exp] 110 / 4e-26 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018489 [exp] 61 / 1e-10 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2) Lus10011184 [exp] 61 / 1e-10 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10022492 [exp] 56 / 1e-08 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1) Lus10016303 [exp] 55 / 1e-08 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10010791 [exp] 55 / 2e-08 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10016796 [exp] 55 / 2e-08 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10004162 [exp] 55 / 5e-08 AT3G58030 367 / 3e-124 RING/U-box superfamily protein (.1.2.3.4) Lus10033697 [exp] 51 / 2e-07 AT4G03510 149 / 1e-44 RING membrane-anchor 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G222000 [exp] 492 / 5e-175 AT2G26350 519 / 0.0 peroxin 10 (.1) Potri.011G051800 [exp] 65 / 5e-12 AT4G27470 163 / 8e-50 RING membrane-anchor 3 (.1) Potri.004G042700 [exp] 64 / 1e-11 AT4G03510 157 / 1e-47 RING membrane-anchor 1 (.1.2) Potri.001G401600 [exp] 61 / 2e-10 AT4G27470 205 / 5e-66 RING membrane-anchor 3 (.1) Potri.011G120800 [exp] 60 / 4e-10 AT4G27470 167 / 7e-51 RING membrane-anchor 3 (.1) Potri.005G127900 [exp] 57 / 3e-09 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1) Potri.002G133000 [exp] 56 / 6e-09 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1) Potri.014G040400 [exp] 55 / 1e-08 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.016G058300 [exp] 56 / 2e-08 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.007G031600 [exp] 53 / 7e-08 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04757 [flax] [poplar] Pex2_Pex12 Pex2 / Pex12 amino terminal region
Representative CDS sequence Show only first row Show all	>Lus10020007 pacid=23156148 polypeptide=Lus10020007 locus=Lus10020007.g ID=Lus10020007.BGIv1.0 annot-version=v1.0 ATGAGCTCTGACCATGGCGGCTCCAGTGGGGTTTCTTCTCCCAGCACTTCAAGCAATCAGCCTCGGCGATTCCCGCTGGGTGCACAACCAGAGATTATGA GAGCCGCTGAGAAGGACGACCAATACGCTTCCTTCCTCTACGATGCCTGCCGCGACGCCATCCGTCATCTCTTTGGTACAAGAGTTGCTCTGGCTTACCA AAAAGAGACGAAGCTTCTTGGGCAAATGCTTTATTATGTGTTAACAACAGGTGCTGGCCAACAAACGCTCGGGGAAGAGTATTGTGACATTATACAGGTT TCAGGGCCTTATGGGCTTCCCCCAACTCCAGCAAAGAGGACACTTTTCGTTCTGTATCAGACAGCTGTTCCTTATCTGACTGAAAGAATTAGCTCACAAC TTGCTTCCCGCGGCATCGCTCTTTCTGAATTGCAGTCTGAGGAGTCCTATGGTGAAATGGCTCCAGGGAGTAGTAGCTTTCAGGCTTCTACATTGGTAGA TGTTTCATCCTACTCTACGCCCGGGCCATCAGTTTCAATAATATCAAGCTTAAAGCAGAAATTTCATAGCCTATGGCTACACACAGTTCGGCGATGGCCT GCTATACTTCCGGTGGCTCGCGAATTTTTGCAGTTGATTCTTCGGACAAACTTAATGTTTTTCTACTTTGAAGGTTTATATTATCATATATCAAAACGAG CAGCTGGCATTCGTTATGTTTTTATTGGAAAGCCATCAAATCAAAGGCCAAGAAGTTTCATGTTTGAAACTAGTTTGCCGTCTTCTGGTTTAGATCAAGG TCTGCCCTTATTAAACGAGGAAGGGAATTTGATATCCACTTCATCTGTGGATGCGCCATCGACTTCAGAGGTAACGAGCAGCGGGGTCAGCAAGTGCACG CTCTGCCTCAGTGACAGGCAGCACCCAACTGCCACTGCATGTGGCCATGTCTTTTGCTGGAATTGTATAATGGAGTGGTGCAATGAGAAGCCCGAATGTC CTTTGTGCCGCACTCCTATAACTCATTCAACCCTGGTTTGCTTGTACCATTCCGACTTCTAG
AA sequence Show only first row Show all	>Lus10020007 pacid=23156148 polypeptide=Lus10020007 locus=Lus10020007.g ID=Lus10020007.BGIv1.0 annot-version=v1.0 MSSDHGGSSGVSSPSTSSNQPRRFPLGAQPEIMRAAEKDDQYASFLYDACRDAIRHLFGTRVALAYQKETKLLGQMLYYVLTTGAGQQTLGEEYCDIIQV SGPYGLPPTPAKRTLFVLYQTAVPYLTERISSQLASRGIALSELQSEESYGEMAPGSSSFQASTLVDVSSYSTPGPSVSIISSLKQKFHSLWLHTVRRWP AILPVAREFLQLILRTNLMFFYFEGLYYHISKRAAGIRYVFIGKPSNQRPRSFMFETSLPSSGLDQGLPLLNEEGNLISTSSVDAPSTSEVTSSGVSKCT LCLSDRQHPTATACGHVFCWNCIMEWCNEKPECPLCRTPITHSTLVCLYHSDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26350		PEX10, ATPEX10	peroxin 10 (.1)		Lus10020007 [exp]	0	1
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10012019 [exp]	3.5	0.9307
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10033820 [exp]	4.9	0.8847
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10037760 [exp]	5.5	0.9026
AT4G21770			Pseudouridine synthase family ...		Lus10007657 [exp]	7.1	0.9214
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Lus10016045 [exp]	7.3	0.8707
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10005521 [exp]	8.1	0.9005
AT1G68890			magnesium ion binding;thiamin ...		Lus10030915 [exp]	11.0	0.9165
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10013636 [exp]	11.0	0.9194
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10032542 [exp]	11.6	0.9139
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043250 [exp]	11.8	0.8805

Compare expression of checked genes

Lus10020007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.