Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19090 186 / 5e-53 Protein of unknown function (DUF630 and DUF632) (.1) AT4G30130 170 / 2e-47 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 78 / 1e-15 Protein of unknown function (DUF630 and DUF632) (.1) AT2G17110 71 / 3e-13 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 66 / 1e-11 Protein of unknown function (DUF630 and DUF632) (.1) AT5G25590 62 / 2e-10 Protein of unknown function (DUF630 and DUF632) (.1) AT1G02110 61 / 4e-10 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 60 / 8e-10 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT1G21740 59 / 2e-09 Protein of unknown function (DUF630 and DUF632) (.1) AT2G34670 56 / 2e-08 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015534 [exp] 309 / 2e-100 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025550 [exp] 70 / 7e-13 AT2G27090 768 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10026763 [exp] 69 / 2e-12 AT2G27090 713 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 68 / 4e-12 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 66 / 1e-11 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10022116 [exp] 64 / 9e-11 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10042723 [exp] 62 / 1e-10 AT1G77500 118 / 9e-30 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025077 [exp] 62 / 3e-10 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10024007 [exp] 61 / 8e-10 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G077000 [exp] 302 / 3e-96 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G197700 [exp] 92 / 2e-20 AT2G27090 804 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G159000 [exp] 81 / 2e-16 AT2G27090 746 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G077700 [exp] 70 / 6e-13 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G142900 [exp] 69 / 2e-12 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G182900 [exp] 69 / 2e-12 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.007G090300 [exp] 68 / 2e-12 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.001G181100 [exp] 65 / 2e-11 AT1G52320 615 / 0.0 unknown protein Potri.002G082000 [exp] 63 / 9e-11 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G179100 [exp] 62 / 3e-10 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04783 [flax] [poplar] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Lus10020008 pacid=23156228 polypeptide=Lus10020008 locus=Lus10020008.g ID=Lus10020008.BGIv1.0 annot-version=v1.0 ATGGGATGTTCTACATCTAAGCTGGATGATGAAGAAGCAGTTAAGCTTTGTAAGGACAGGAAACGGTTCATTAAGCAGGCTGTAGACCTAAGAACACGAT TAGCTTCTGGCCACTTGGCTTATGTTCAGTCTTTGAAAAGGGTGTCTTCTGCTCTCCGAGAATATATCGAATGGGGCGAGCCTCAGGATTTGTTTCTGGA TTCCTTCATGACTCCAAATTTCACTCCCGTGAAGAAAGGCAGCCCACAGTTGATCTCGAGTTCGCATAAATCCTTCACACCAGCACTTCCTCACTCGAGA ACTAAGTCGACTATCAGGGTAAATTACCTGAAATCAGGTGGGAACCAAACAGTTTTGGTTGAAGAGAGACCTCAGTCGCCAGAGACATACCATCTTGAAG CATATCCACCAATGCAGTACTACGGTGCTGATAGCTTCTTTGGAGCACAACAGCCTTCTCAAACGAGCTCTTCCTTCTTTTCGTACTCCCCGGACGATAG GCCTTACATTCCTCCTCCTTCACCTCAAACATCTCAATGGGATGGTTTTTGGGATCCTTTCTCTTCACTGGATTACTATGGTTATCCTGTTCGTAGCAGC ATTGATCATCATATGATTGGTGATGATGAGATTCGAGGGCTAAGACGGGTTCGTGAAGAGGAAGGGATCCCTGACTTAGAAGATGAAACTGAGCATGAAG CAGATGACAGAGAAAACCTGAGAAGGAAAGAACAACAAGCTCCGAGGAGAGAACAACAAGCTCCGAGGAGAGAACAACAAGCTCCGCGGAGAGAACAACA AGCTCCAAGGAGAGAACAACAAGCTCCAAGGAGAGAACAACAAGCTCCAAGGAGAGAACAACAAGCTCCAAGGAGAGAACAACAAGCTCCAAGGAGAGAA CAACAAGCTCCAAGGAGAGAACAACAAGCTCCAAGGAGAGAACAACAAGCTCCAAGGAGAGAACAACAAGCTCCAAGGAGAAAGCAAGGCTCAGTATTCA TCCACCTCAAATGA
AA sequence Show only first row Show all	>Lus10020008 pacid=23156228 polypeptide=Lus10020008 locus=Lus10020008.g ID=Lus10020008.BGIv1.0 annot-version=v1.0 MGCSTSKLDDEEAVKLCKDRKRFIKQAVDLRTRLASGHLAYVQSLKRVSSALREYIEWGEPQDLFLDSFMTPNFTPVKKGSPQLISSSHKSFTPALPHSR TKSTIRVNYLKSGGNQTVLVEERPQSPETYHLEAYPPMQYYGADSFFGAQQPSQTSSSFFSYSPDDRPYIPPPSPQTSQWDGFWDPFSSLDYYGYPVRSS IDHHMIGDDEIRGLRRVREEEGIPDLEDETEHEADDRENLRRKEQQAPRREQQAPRREQQAPRREQQAPRREQQAPRREQQAPRREQQAPRREQQAPRRE QQAPRREQQAPRREQQAPRREQQAPRRKQGSVFIHLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19090			Protein of unknown function (D...		Lus10020008 [exp]	0	1
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10026993 [exp]	2.8	0.8945
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Lus10016591 [exp]	3.9	0.8882
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10009840 [exp]	5.2	0.8733
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011585 [exp]	5.3	0.8912
					Lus10039387 [exp]	5.5	0.8920
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	7.6	0.8923
AT2G19090			Protein of unknown function (D...		Lus10020009 [exp]	9.5	0.8498
AT3G63430			unknown protein		Lus10003090 [exp]	9.8	0.8860
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	13.0	0.8792
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10039641 [exp]	14.5	0.8599

Compare expression of checked genes

Lus10020008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.