Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19090 340 / 1e-109 Protein of unknown function (DUF630 and DUF632) (.1) AT4G30130 325 / 9e-105 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 137 / 6e-35 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT1G77500 136 / 6e-35 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 135 / 3e-34 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 129 / 3e-32 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 127 / 9e-32 Protein of unknown function (DUF630 and DUF632) (.1) AT2G17110 117 / 2e-28 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 113 / 5e-27 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT1G20530 103 / 1e-23 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015534 [exp] 611 / 0 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 137 / 4e-35 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 137 / 5e-35 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024007 [exp] 137 / 5e-35 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025077 [exp] 137 / 5e-35 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10014445 [exp] 135 / 2e-34 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10023949 [exp] 132 / 1e-33 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10042722 [exp] 126 / 1e-31 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10029683 [exp] 124 / 9e-31 AT1G21740 696 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G077000 [exp] 463 / 9e-158 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G177200 [exp] 162 / 4e-44 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 158 / 1e-42 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G249400 [exp] 142 / 4e-37 AT1G20530 359 / 9e-116 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G077700 [exp] 142 / 7e-37 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G082000 [exp] 142 / 1e-36 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G090300 [exp] 140 / 3e-36 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G179100 [exp] 136 / 9e-35 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G182900 [exp] 134 / 4e-34 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.005G108400 [exp] 133 / 9e-34 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632)
Representative CDS sequence Show only first row Show all	>Lus10020009 pacid=23156217 polypeptide=Lus10020009 locus=Lus10020009.g ID=Lus10020009.BGIv1.0 annot-version=v1.0 ATGTTGAATCCAGTAGCTATAATCCGTTCAGCTTCGTTTCGTTCATCCTCGTCAAGATTTGTGGGCAACTTTACGAGAGACGAGGGTGATGAAAGCTGCA GTGACTTATCAGAGGAATCGTCCGTGATCTCTGGTGGTCACCAGTCAACATTAGACAGATTATATGCATGGGAGAAGAAGCTATTTGAGGAAGTGAAGTC AGGTGAGAAGGTTCGAATAGCATACGAAAAGAAATGCATGCAGCTTAGGAACCAAGATGTGAAGGGAGAGGATCCCACTGTGTTTGACAAAACAAGGACA GCTATTAGAGATCTGCATACTCAAATGAAGGTTTCAATACACTCTGTTGAAGTCATTTCTAATAGAATACAGACACTAAGGGAGAGAATACAGACGCTAA GGGATGAAGAATTACAGCCTCAACTTTTAGAACTAGTACAAGGGTTAGCAACAATGTGGAAGATAATGGCCGAGCGCCATCAGTTGCAGAAGCAAACACT GGACAAAGCCAAGGTATTATTGGCAGGAACACCTTCTAAGCTAGAAGCAAGAAGGAGAGCTTCCATGTCCATGAACGATCCTCAACGTCTAGCAAGATCA GCTGCCAAGGTGGAGTCGGAGCTAAGGAACTGGAGAGCATGCTTCGAAACATGGATCGCTTCTCAGCGATCCTACATACAGGCACTAACAGGTTGGCTCC TGAGGTGTGTAAGGTTGGACCCTGAGATATCAAAACTGCCATTCTCTCCTCCTCGCCGGTCTAGCACCACCTTCCCACTGTTTGGTCTGTGCATTCAATG GTCAAGGTTTTTGGATGAGGTTCAAGAGAAGCCGGTGCTGGACGGGATGGAGACTGCAGCGGATTGGATGGGGTCGATTCACACGCAGCAGTTGAGAGAT GACTCTCCTACTTATGTAGGAGGATCAAGGAGATATAGTGGGGGTGGAGAAATGGAGATAGTAGAAGGTGGTAAGGTGGAAGAGGCGATGACTGTGGAGA AAATGGCTGAAATTGCAATGAGAGTGCTGTGTGCTGGAATGTCAGTTACAATAAGCTCATTAACTGAGTTTGGGATTGGTGCGGCTGAAGGATATGAGCA GATTTTCAAGCAATGGGAGACCATCAAAGCCCCACAGCCGCCGGTGGTTGCTGCTGGCCGCCGATTAGTTTAG
AA sequence Show only first row Show all	>Lus10020009 pacid=23156217 polypeptide=Lus10020009 locus=Lus10020009.g ID=Lus10020009.BGIv1.0 annot-version=v1.0 MLNPVAIIRSASFRSSSSRFVGNFTRDEGDESCSDLSEESSVISGGHQSTLDRLYAWEKKLFEEVKSGEKVRIAYEKKCMQLRNQDVKGEDPTVFDKTRT AIRDLHTQMKVSIHSVEVISNRIQTLRERIQTLRDEELQPQLLELVQGLATMWKIMAERHQLQKQTLDKAKVLLAGTPSKLEARRRASMSMNDPQRLARS AAKVESELRNWRACFETWIASQRSYIQALTGWLLRCVRLDPEISKLPFSPPRRSSTTFPLFGLCIQWSRFLDEVQEKPVLDGMETAADWMGSIHTQQLRD DSPTYVGGSRRYSGGGEMEIVEGGKVEEAMTVEKMAEIAMRVLCAGMSVTISSLTEFGIGAAEGYEQIFKQWETIKAPQPPVVAAGRRLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19090			Protein of unknown function (D...		Lus10020009 [exp]	0	1
AT2G19090			Protein of unknown function (D...		Lus10015534 [exp]	1.0	0.9366
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10019694 [exp]	1.4	0.8998
AT1G62050			Ankyrin repeat family protein ...		Lus10003524 [exp]	4.6	0.8860
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10016423 [exp]	4.9	0.8480
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002032 [exp]	8.0	0.8669
AT3G27390			unknown protein		Lus10022317 [exp]	9.0	0.8205
AT2G19090			Protein of unknown function (D...		Lus10020008 [exp]	9.5	0.8498
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Lus10016591 [exp]	12.4	0.8414
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	14.1	0.8353
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10034828 [exp]	15.1	0.8170

Compare expression of checked genes

Lus10020009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.